« Back to Papaver somniferum search


Detailed information on CNT30409824


BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 6e-122

BLAST vs NONCODE:
NONATHT001041, E-value = 1e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Papaver somniferumJuglans regia60.7126.9880.88408forward
CNT30500934Papaver somniferumCoffea canephora29.4612.3484.34198forward
CNT30631092Papaver somniferumVigna unguiculata58.9335.0181.57396forward
CNT3085816Papaver somniferumVigna radiata54.0256.980.72363forward
CNT30172058Papaver somniferumTrifolium pratense61.3127.1682.52412forward
CNT3074635Papaver somniferumBrassica juncea47.4750.4781.19319forward
CNT30605341Papaver somniferumGossypium raimondii57.8935.6684.06389forward
CNT30572302Papaver somniferumVitis vinifera23.9623.383.23161forward
CNT3028352Papaver somniferumTheobroma cacao38.2427.7885.99257forward
CNT3035896Papaver somniferumCucumis melo40.3330.1181.18271forward
CNT30112551Papaver somniferumFicus carica54.4659.1381.42366forward
CNT3040149Papaver somniferumMarchantia polymorpha41.2228.3882.31277forward

Expression of CNT30409824

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLWACTKLRFPSLSSPSPSGPPPTLYPSTNPISTT*

>peptide 2 (31 aa)
LNKIPKHGEHSKSSILDLLYLQFRKGLWVIS*

>peptide 3 (35 aa)
MENIASLPFLISFTFNSEKDSGSSANPRGSKDPPG*

Sequence

>CNT30409824
GCCTGAACAAAATACCCAAACATGGAGAACATAGCAAGTCTTCCATTCTTGATCTCCTTTACCTTCAATTCAGAAAAGGACTCTGGGTCATCAGCTAACC
CTAGAGGGTCAAAAGATCCACCGGGGTAAAGTTTGTCTAGTCCTTCTCCAAGTGGACCACCACCAACTCTGTATCCCTCAACAAACCCCATTAGAACAAC
TTGAGTAGCCCAGATTGCAAGGATGCTTTGGGCATGTACCAAGTTGCGGTTTCCAAGTTTGTCTAGTCCTTCTCCAAGTGGACCACCACCAACTCTGTAT
CCCTCCACAAACCCCATTAGCACAACCTGAGTAGCCCAGATTGCAAGAATGCTTTGGGCATGTACCAAGTTGGGGTTTCCAAGGTAGTCCAAACCTCCCT
CGGAGAAGATCTGTGATCCAGCTTTGAACCATACTGCCTCGCCGAAGTTGATACCGTTCTTTGAGAGAACCTCAGGGAAGACGCATCCTAGGGCACCCAA
CATAGCCCACCTGCAGTGGATCACTTCGAGTTCGCGGTTCTTTGCAAATGTCTCTGGGTCAGCAGATAACCCGGCTGTGTCCCAACCGTAGTCACCTGGG
AATTCACCAGTGAGGTAAGATGGGGTCTGTTCTGAGAATGGTCCCAAGTACTTGGGTCTGTCTGGTCCATAC