CANTATAdb - search

Detailed information on CNT3074635

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 1e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30711471	Brassica juncea	Glycine max	42.88	20.01	81.92	271	forward
CNT30539463	Brassica juncea	Brassica napus	52.22	45.71	99.7	330	forward
CNT30409824	Brassica juncea	Papaver somniferum	50.47	47.47	81.19	319	forward
CNT30119392	Brassica juncea	Citrus clementina	65.66	45.16	80.48	415	forward

Expression of CNT3074635

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSLGQRRARRCPSRSLRGILRLGRMVCSRRTVPSTWDGLV

Sequence

>CNT3074635
TTGTGCAATAAGAAGTCTTGTTTTTATTCATTCATATGCCAAATATCCATTCAATGAAAAGAGCCAGTCACTAAGTAAATAGACACGAACAATACATTAA
CGGGTTTTACAAAGTAGATAAGATAGTGAAGCAAATCCATACAATAATTAAATTACTTTCCGGGGACAAAGTTGGTAGCGTAAGACCAGATTCAACGGGT
CGAACGCACCTCCAGGGTAAAGCGGGTCAAGACCTTCTCCGAGAGGACCACCTCCGATTCTGTACCCTTCGATGAGGCCCATGAGCACAACTTGACAAGC
CCATATGGCTAAGATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCGAGGCCTCCTTCTGAGAAGATCTGGGATCCTGCCTTGAACCACACG
GCTTCTCCGAATTTGACTCCGTTCTTGGAGAGAATCTCGGGGAATGTGCAGCCTAGAGCTCCCAGCATTGCCCATCTGCTGTGGATTACTTCGAGCTCAC
GGTTCTTAGCGAATGTCTCTGGGTCAGCGGAGAGCCCGGCGGTGTCCCAGCCGTAGTCTCCGGGGTATTCTCCGGTTAGGTAGGATGGTGTGTTCTCGGA
GAACGGTCCCAAGTACTTGGGACGGTCTGGTC