Detailed information on CNT3040149


BLAST search results

BLAST vs Swiss-Prot:
sp|P14278|CB24_SOLLC, E-value = 1e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30409824Marchantia polymorphaPapaver somniferum28.3841.2282.31277forward

Expression of CNT3040149

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRGMVELQKSWRIFICSTKRSAGRERRWTWRG*

>peptide 2 (31 aa)
MQAALIVSSEPNRFNRTQKQRNVTAEMHSLS*

>peptide 3 (29 aa)
MAHRAWITSNSRFLAKVSGSAESPAVSHP*

>peptide 4 (53 aa)
MEAGAAAFEVLRMTTRASPTFTFWVRALPDRPKACPTKVDAETAVAAMLTRRR*

>peptide 5 (58 aa)
MASHLLASSKCLISQLKDFRLVSGGEGGGVGPECSGRGRGSSYRGSPNLPQRRSVIQP*

>peptide 6 (59 aa)
MRLIMRSLPDGGGGGGLRGLAHDNAGLTNIHLLGEGIAGQAQSLSNEGGCGDGGGGHAD*

>peptide 7 (38 aa)
MGPSTWVGPHRTFRTQCKQLSSSAQNPIDSTEPKNREM*

>peptide 8 (49 aa)
VAIGSFEVTYEATIYTWCRRTFEFHGKPSPRQLQMPNLTAEGFSSSFRG*

Sequence

>CNT3040149
GGTAGCGATTGGCAGCTTTGAAGTAACCTACGAAGCAACTATATACACCTGGTGCCGACGGACTTTTGAGTTCCATGGCAAGCCATCTCCTCGCCAGCTC
CAAATGCCTAATCTCACAGCTGAAGGATTTTCGTCTAGTTTCCGGGGGTGAAGGTGGTGGCGTAGGCCCAGAATGCTCTGGGCGTGGACGAGGCTCGAGT
TACCGAGGTAGTCCAAACCTCCCTCAGCGAAGATCTGTGATCCAGCCTTGAACCACACTGCCTCTCCGAACTTCACACCGTTCTTGGCCAACAACTCGGG
GAAGACGCATCCCAGAGCTCCCAACATGGCCCATCGAGCGTGGATCACCTCCAATTCACGGTTCTTGGCGAAGGTCTCGGGGTCAGCAGAGAGTCCTGCA
GTGTCCCATCCGTAGTCACCGGGGAACTCACCAGTCAGGTACGAGGGGGTAGCTCCGGAGAATGGGCCCAAGTACTTGGGTCGGTCCTCACCGTACCTTC
AGAACACAATGCAAGCAGCTCTCATCGTCAGCTCAGAACCCAATCGATTCAACAGAACCCAAAAACAGAGAAATGTAACAGCAGAAATGCATTCACTTAG
CTAGACTTGAAGAGAAGCACAATGAGGCTGATCATGAGATCGTTACCAGATGGAGGCGGGGGCGGCGGCCTTCGAGGTCTTGCGCATGACAACGCGGGCC
TCACCAACATTCACCTTCTGGGTGAGGGCATTGCCGGACAGGCCCAAAGCCTGTCCAACGAAGGTGGATGCGGAGACGGCGGTGGCGGCCATGCTGACTA
GAAGGCGGTGAGAGGAGGTGAAGTGTTCGAGTATGAGAGGAATGGTTGAGTTGCAGAAAAGCTGGAGAATCTTTATATGTTCGACTAAACGGAGTGCAGG
TAGAGAGCGTAGATGGACGTGGCGGGGGTAAAAGGGATAGGATATCTGATAATATCGAGTGAGCCAATGAGGCCAG