Detailed information on CNT30544156


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315642Brassica napusCorylus avellana20.7913.0793.6563forward
CNT30382680Brassica napusManihot esculenta22.7722.7791.369forward
CNT3096457Brassica napusSolanum tuberosum20.7920.6688.8963forward
CNT30509538Brassica napusSolanum lycopersicum20.4625.9490.3262forward
CNT30261535Brassica napusBrassica rapa100.3310097.04304forward
CNT30652801Brassica napusRosa chinensis25.4125.1690.9177forward
CNT30154558Brassica napusPrunus persica20.4620.2690.3262forward
CNT30120361Brassica napusCitrus clementina25.7425.7489.7478reverse complement

Expression of CNT30544156

Peptides detected in this lncRNA

>peptide 1 (58 aa)
RAKQRELATRVGTIRWWNTGLVHGSGLVGKFLSSPVQAESYLSGLSEGSNQVGAKVGG*

>peptide 2 (40 aa)
MRQAGFTEQRLLPALCSGRITARRHSDLLWPAGSFSAEPPI

Sequence

>CNT30544156
GTCGAGCTAAGCAACGAGAGCTTGCGACCCGAGTGGGGACAATAAGATGGTGGAACACTGGTTTGGTCCACGGGTCGGGTCTGGTTGGCAAGTTTCTGAG
CAGCCCAGTCCAAGCTGAGAGTTATCTGTCTGGTTTGAGCGAAGGCTCGAATCAGGTGGGTGCTAAAGTCGGAGGGTAATGCGTCAGGCTGGTTTCACAG
AGCAGCGACTACTTCCCGCTCTCTGCAGTGGACGGATAACGGCTCGGCGCCACTCAGACCTGCTATGGCCTGCTGGTTCGTTCTCAGCTGAACCACCAAT
TTT