Detailed information on CNT30478989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514137Arabidopsis halleriJuglans regia20.2619.9488.7162forward
CNT30377398Arabidopsis halleriArabidopsis thaliana94.1278.0589.24288forward
CNT30382680Arabidopsis halleriManihot esculenta19.9320.1398.3661forward
CNT30526005Arabidopsis halleriPhaseolus vulgaris20.2620.4690.3262forward
CNT30632205Arabidopsis halleriVigna unguiculata20.5910.1388.8963forward
CNT30143824Arabidopsis halleriMedicago truncatula20.5920.8687.363forward
CNT30724433Arabidopsis halleriLupinus angustifolius20.2620.3991.9462forward

Expression of CNT30478989

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MREAGFTEQRLPPALSSGRTTVHSHLDPLWSAGSYSA*

>peptide 2 (57 aa)
SSYITRACNPSGDFKMVEHWFGPRVGYVVGIFLDCPVQAVSEPYELSVGLVRTVSKG*

Sequence

>CNT30478989
GTCGAGCTATATAACGAGAGCTTGTAACCCAAGTGGGGACTTTAAGATGGTGGAACACTGGTTCGGCCCACGGGTCGGATATGTTGTTGGCATATTTCTG
GATTGCCCAGTCCAAGCTGTGAGTGAACCGTACGAATTAAGCGTAGGTTTGGTTCGAACAGTTTCTAAAGGTTGAGGGTAATGCGTGAGGCTGGCTTCAC
AGAGCAGCGACTACCTCCCGCTCTCAGCAGTGGACGGACCACAGTCCATAGCCACTTAGATCCACTATGGTCTGCTGGCTCGTACTCAGCTTGAACCACC
ATTTTT