« Back to Arabidopsis thaliana search


Detailed information on CNT30377398


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382680Arabidopsis thalianaManihot esculenta16.5320.1395.0861forward
CNT30652801Arabidopsis thalianaRosa chinensis19.2423.288.7371forward
CNT30478989Arabidopsis thalianaArabidopsis halleri76.6992.4889.05283forward
CNT30155059Arabidopsis thalianaPrunus persica16.820.288.7162forward
CNT30644548Arabidopsis thalianaCannabis sativa19.2422.0591.5571forward

Expression of CNT30377398

Peptides detected in this lncRNA

>peptide 1 (77 aa)
VGLDCPIQAVSEPYEPSEGLVRTVAKACNPSGDYKMVEHWIGPRVGFVVGIGLDCPIQAVSEPYEPSEGLIRTVAKG*

>peptide 2 (37 aa)
MNQAKVWSVRLLKLVTQVGTIRWWNTGSAHGSDLLLA*

Sequence

>CNT30377398
CGTAGGTCTGGACTGCCCAATCCAAGCTGTGAGTGAACCGTATGAACCAAGCGAAGGTTTGGTCCGTACGGTTGCTAAAGCTTGTAACCCAAGTGGGGAC
TATAAGATGGTGGAACACTGGATCGGCCCACGGGTCGGATTTGTTGTTGGCATAGGTCTGGACTGCCCAATCCAAGCTGTGAGTGAACCGTATGAACCAA
GCGAAGGTTTGATCCGTACGGTTGCTAAAGGTTGAGGGTATTGCGTTAGGCTGGCTTCACAGAGCAGCGACTACCTCCCGCTCTCAGCAGTGGACGGACA
ACGGTTCGACGCCACACAAATCCACTATGGTCCGCTGGCTCGTAACCCGCTTGAACCACCATTTTTTTA