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Detailed information on CNT30441596


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30474763Aegilops tauschiiSaccharum spontaneum69.9758.9285.83515forward
CNT30140296Aegilops tauschiiLolium perenne71.3354.1295.43525forward
CNT30340478Aegilops tauschiiEragrostis tef66.357.7585.25488forward
CNT30368762Aegilops tauschiiSorghum bicolor31.6646.1482.4233forward
CNT30595666Aegilops tauschiiOryza meridionalis55.4332.7488.24408forward
CNT30369533Aegilops tauschiiOryza glumipatula32.0742.2286.86236forward
CNT30575228Aegilops tauschiiOryza barthii32.0718.6386.86236forward
CNT30583144Aegilops tauschiiEchinochloa crusgalli63.8640.9185.53470forward
CNT30557526Aegilops tauschiiPanicum hallii62.0950.1185.12457forward

Expression of CNT30441596

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEPGLYQSWSRRCSAKPMSAISNTKSVYGSAQYW*

>peptide 2 (65 aa)
INITSMHAARVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGEDVVVDGV*

>peptide 3 (54 aa)
YKYYKHARSTRTNLHFTPTLAYIPLARSRFPRRRVPCTGRRCSDRIGSISPSGT*

>peptide 4 (54 aa)
MLLLTGSERWSRRDMPRKASMARRPFLISLSLSSFISFSLLVPNPSGLKMGPPG*

>peptide 5 (50 aa)
MGRPSTGRCPPAGSRLPGTTGSPSPGAPGPPCPGPPGRSCPPPPSSPSGR*

Sequence

>CNT30441596
ATATAAATATTACAAGCATGCACGCAGCACGCGTACAAATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCACGTTTCCCACGACGA
CGGGTACCATGCACAGGACGACGATGCTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGA
GAGGTGGTCGAGGAGGGACATGCCGAGGAAGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGCTCTTG
GTCCCGAACCCGAGCGGGTTGAAGATGGGCCCGCCGGGGTAGGCGGGGTCGCCGGAGCCGCCGAGGTACTTCTCAAGGCCCAGGAAGTACTGCTTCCCCA
TGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGTATGGGTCGGCCCAGTACTG
GTAGGTGCCCGCCGGCGGGATCGCGCCTGCCTGGAACCACGGGATCGCCGTCTCCGGGGGCACCAGGCCCACCTTGCCCAGGGCCTCCGGGGCGATCATG
CCCACCACCCCCATCATCGCCGTCCGGCCGTTGAAGATCTCGCCGTAGGCCAGCCACCTGGGCTCGATGAACCCGCCGGTGCCCTCCGGGTCGGACAGCC
CCAAGGGGTCGAAACCAAAGTCACCGGGCAGCCTGC