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Detailed information on CNT30145845


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-107

BLAST vs NONCODE:
NONBRAT004778, E-value = 1e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631224Medicago truncatulaVigna unguiculata90.7362.4583.3509forward
CNT3085597Medicago truncatulaVigna radiata94.4738.4184.72530forward
CNT30359247Medicago truncatulaLactuca sativa60.0740.0280.71337forward

Expression of CNT30145845

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPFPSQRVCNCLPSSCMFLLVESRRFGTKGVLFPRELNLLCREFQVL*

>peptide 2 (37 aa)
MLVRRNLQALSQVLRSIVFPWNQDCTNLGVFCVLQIP*

Sequence

>CNT30145845
GGTATGGTCCAACTCTTGTAACTAGAGCTTGAACAAAGTAACCCAATATTGCCAACATAGCTAACCTTCCATTCTTAACTTCCTTCAGCTTTAAATCCTT
CAATGATTTCTCATCTTTACCAAAACCAAGAGGGTTAAATATAGGTCCACCAGGGTATGCTGGTTCGCCGGAACCTCCAAGCCCTTTCTCAAGTCCTAAG
AAGTATTGTTTTCCCATGGAACCAGGATTGTACCAATCTTGGAGTCTTCTGTGTTCTGCAAATCCCATGAATGCCATTTCCATCACAAAGAGTGTGTAAT
TGTCTGCCCAGTAGTTGTATGTTCCTGCTGGTGGAATCACGCCGGTTTGGAACCAAGGGAGTGCTGTTTCCGCGGGAATTAAACCTGCTTTGCCGAGAAT
TTCAGGTGCTATAGCTCCGGCTGCTCCCAACATTGCAAATCGGCCGTTGATTATCTCACCGTATGCTAACCATCTTGGTTCAATGAATCCACCGGTTCCT
TCGGGATCTGAAAGTCCTAGAGGGTCAAATCCAAAGTCACCCGGAAGGCTGCAAGTGATGA