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Detailed information on CNT30347972


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36718|CB120_HORVU, E-value = 6e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Eragrostis tefOryza sativa20.0717.5195.71163forward
CNT30523309Eragrostis tefSetaria italica21.1814.6998.26172forward
CNT30708773Eragrostis tefGlycine max17.6122.7781.82143forward
CNT30300292Eragrostis tefTriticum aestivum18.7259.1492.76152forward
CNT30554731Eragrostis tefOryza glaberrima20.0711.3795.71163forward
CNT30138628Eragrostis tefLolium perenne16.1327.8195.42131forward
CNT30596738Eragrostis tefOryza meridionalis14.6621.1494.96119forward
CNT30370946Eragrostis tefOryza glumipatula20.0713.1895.71163forward
CNT30102887Eragrostis tefOryza rufipogon20.0719.4595.71163forward
CNT30577292Eragrostis tefOryza barthii20.0714.6895.71163forward
CNT30117373Eragrostis tefOryza nivara20.0710.4295.71163forward
CNT30604528Eragrostis tefOryza punctata20.0714.2793.25163forward

Expression of CNT30347972

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGSWLTLPGFLMSCHRRPWSAPPGSASRPRPASPTARSPAPPARTTAGSPGPPPGPAGRNRCR

>peptide 2 (49 aa)
MYIPFRRTFLDDPHSLQPITLCNITTWSELNLLSRSLTRHMTHTDPGRN*

>peptide 3 (48 aa)
MMVLCHGSDRCCSRLSNGPLPVTLCWMRNPRNASIASLPARINHGTNE*

Sequence

>CNT30347972
CCAAATTAAAACGCACTGACAAGCAAGTAGAGCACACATTGAGCAGCCTCTACCCTTAGCCTCCCCTGTCATTAATGTACATACCATTCAGGCGAACATT
CCTCGACGACCCTCACTCTCTCCAACCAATCACACTATGCAATATTACAACATGGTCTGAACTGAATCTCCTCTCCAGATCATTGACACGGCACATGACA
CATACTGATCCGGGGAGGAATTGACACCAACCCGTACCGGGGTGTTGCACGTATAATTTACATCAGTCCACAAAAGTGAACTCAGCTGGAGAGAGTCTGG
ATGATGGTGTTGTGCCACGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAATGGGCCCTTGCCGGTGACGTTGTGCTGGATGAGGAACCCCAGGAACGCAA
GCATCGCCAGCCTCCCTGCAAGAATCAATCACGGGACAAACGAGTAGATGATTAGTGACATTCCAGAGAAGGAAATCGAGTGATTGATCGGCCGGGAAGT
ACGCTACTCACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGCGTGGGCGCGAAGTTGAGCGGGTTGAAGACGCTGCCCGGGTAGCCGCACTCGTGCGGC
GGCAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGCCTTGGTCAGCACCTCCGGGATCAGCAT
CCCGGCCACGCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGGCCCAGCGGGTCGAAA
CCGTTGTCGCCG