Detailed information on CNT30554731


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30684486Oryza glaberrimaTriticum urartu8.0353.7494.78115forward
CNT30347972Oryza glaberrimaEragrostis tef11.3720.0795.71163forward
CNT30596737Oryza glaberrimaOryza meridionalis28.9668.2696.63415forward
CNT30102887Oryza glaberrimaOryza rufipogon36.6462.6598.67525forward
CNT30584554Oryza glaberrimaEchinochloa crusgalli4.6130.793.9466forward
CNT30117373Oryza glaberrimaOryza nivara42.8539.2395.93614forward

Expression of CNT30554731

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRCWVGVANGRRRLLSSVIRMPGYGGIKGRVSIGWRSQLWLVAAATSDG*

>peptide 2 (53 aa)
MGGVASYPALSGCRDTGESKGGFLLDGGLSCGWLLLPRRTGEMVGADRSEPRIF

>peptide 3 (84 aa)
MHAGNNYHNTHSKSESHHIHISLSPPPNSLTSYTCILQQKKKKKQEENIFDRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 4 (30 aa)
MEDCPRKVDLSDADGRRAATGARAVTDAMA*

>peptide 5 (29 aa)
FFLSLNRYAILNQCANEALDKQLSVVYPP*

>peptide 6 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 7 (34 aa)
MLLRVLVRFVPLASSFSLASRVGSKLRGLKTLPG*

>peptide 8 (48 aa)
MMVLCHGSDRCCSRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFL*

>peptide 9 (37 aa)
MHTPTKKKEETRREHLRSPNHRFHQPELIKLLEMPWP*

Sequence

>CNT30554731
TTTTTTTTTGTCTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCG
AGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCC
ATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATATCTCTCTCTCTCCTCCCCCCAATTC
ATTAACATCTTATACATGCATACTCCAACAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCGATCGCCCAATCATCGGTTTCACCAGCCTGAACTCA
TCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTG
CAGCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACAAAAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTT
CTTTTCTTATGATATATTGATGTGCAATGCTTTTACGTGTTTTGGTTAGATTCGTACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGGGTGGGCTCGAA
GTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTG
ATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGGAGAAGGGAGGCCGG
GGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGCCTCGTAGTCGGTGCGCGGGCGAGACGGATGGAGGATTGCCCTAGGAAGGTAGACTTGAGCGA
CGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGT
CACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAACTGTCCGGGAGTGGCCGGCGCTGCCAGGTGGCCACGGCGGCGAGGGCGG
CGACGGACGGCGGAGATCGGCGGTGGGGGTGGATCGGACGGCCAGGATGCGTTGTTGGGTGGGTGTGGCCAATGGGAGGCGTCGCCTCTTATCCAGCGTT
ATCCGGATGCCGGGATACGGGGGAATCAAAGGGAGGGTTTCTATTGGATGGAGGTCTCAGCTGTGGCTGGTTGCTGCTGCCACGTCGGACGGGTGAGATG
GTTGGTGCAGATCGCTCGGAGCCTCGGATTTTT