Detailed information on CNT30334008


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Cynara cardunculusCorylus avellana26.2218.588.1459reverse complement
CNT30549105Cynara cardunculusIpomoea triloba23.569.3188.6853reverse complement
CNT3020673Cynara cardunculusCitrullus lanatus30.226.486.7668reverse complement
CNT30502187Cynara cardunculusNicotiana attenuata34.672.1589.7478reverse complement
CNT3096145Cynara cardunculusSolanum tuberosum325.7484.7272reverse complement
CNT30541063Cynara cardunculusBrassica napus28.898.1986.1565reverse complement
CNT30234760Cynara cardunculusBrassica oleracea31.1122.9587.1470reverse complement
CNT30145769Cynara cardunculusMedicago truncatula34.6721.4388.4678reverse complement
CNT30609232Cynara cardunculusGossypium raimondii21.789.2391.8449reverse complement
CNT30622764Cynara cardunculusDaucus carota28.8914.8492.3165reverse complement
CNT30423559Cynara cardunculusPapaver somniferum35.1116.7792.4179reverse complement
CNT30328555Cynara cardunculusAsparagus officinalis34.2222.8588.3177reverse complement

Expression of CNT30334008

Peptides detected in this lncRNA

>peptide 1 (40 aa)
FFFCDFSQMRPKHFVLDSRYFFSSHTSFDTTMVVLMYHLD*

Sequence

>CNT30334008
CTTCTTCTTCTGTGATTTTTCTCAGATGCGACCAAAACATTTTGTGTTAGATAGCAGATACTTTTTTTCTTCACATACATCGTTTGACACAACAATGGTG
GTTTTGATGTATCACCTCGATTAGATGTCTGATTTCATTGTGGTACTGTTGGTATTCAAGGGATTGCTTGGGCTTTTAGGGGTATGATCTTTGCCCTTGT
CTACTGCACTGCTGGTATCTCAGGT