« Back to Nicotiana attenuata search


Detailed information on CNT30502187


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08451|PIP1_SOLLC, E-value = 7e-67

BLAST vs NONCODE:
NONVVIT001875, E-value = 6e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640314Nicotiana attenuataNymphaea colorata1.9821.386.1172forward
CNT30316259Nicotiana attenuataCorylus avellana7.8789.6680.42286forward
CNT30549105Nicotiana attenuataIpomoea triloba8.3653.4381.58304forward
CNT30517286Nicotiana attenuataJuglans regia3.1621.3484.35115forward
CNT30728842Nicotiana attenuataCorchorus capsularis2.3724.7890.786forward
CNT30404916Nicotiana attenuataBeta vulgaris2.5322.7283.792forward
CNT30711465Nicotiana attenuataGlycine max3.325.786.67120forward
CNT30163276Nicotiana attenuataPistacia vera3.4740.9184.92126forward
CNT30560771Nicotiana attenuataActinidia chinensis4.6222.0881.55168forward
CNT30589490Nicotiana attenuataMusa acuminata2.9737.2484.26108forward
CNT3085870Nicotiana attenuataVigna radiata2.7522.7886100forward
CNT30552699Nicotiana attenuataOryza glaberrima2.7525.4583100forward
CNT30145769Nicotiana attenuataMedicago truncatula5.251.9281.48189forward
CNT30261241Nicotiana attenuataBrassica rapa2.4524.4585.3989forward
CNT30613102Nicotiana attenuataArabis alpina3.6350.7787.12132forward
CNT30609232Nicotiana attenuataGossypium raimondii3.3622.9881.15122forward
CNT30227661Nicotiana attenuataAnanas comosus3.1650.4486.09115forward
CNT30211930Nicotiana attenuataHelianthus annuus5.0955.8982.16185forward
CNT30623024Nicotiana attenuataDaucus carota3.4137.2486.29124forward
CNT30595656Nicotiana attenuataOryza meridionalis1.9821.5688.8972forward
CNT30423559Nicotiana attenuataPapaver somniferum3.7128.6685.93135forward
CNT30644102Nicotiana attenuataCannabis sativa2.8623.9188.46104forward
CNT3024497Nicotiana attenuataPopulus trichocarpa2.6133.8187.3795forward
CNT30319296Nicotiana attenuataAsparagus officinalis2.8323.2585.44103forward
CNT30334008Nicotiana attenuataCynara cardunculus2.1534.6789.7478reverse complement

Expression of CNT30502187

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MTKNQQEWKGKLHSCNLDTASKPNTCLEPLKQGKTESFYKYSRIN*

>peptide 2 (35 aa)
MSKRQIKEGKDSPFCNLDRESKPLNMFSTSKTGKN*

>peptide 3 (44 aa)
MRGSEEGPDHKGLLYAALPYIKRLFPRLEPVTSWSHYNNFSQLF*

>peptide 4 (30 aa)
MVTWSQGWSVDRPSKNCTVYIDKILCFRSI*

>peptide 5 (32 aa)
MMITPLVQTKELVVALCNPYLFEQLFLMAVFL*

>peptide 6 (29 aa)
MGSGAKICNTIQNFHNDVLFLIRIFMSLR*

>peptide 7 (49 aa)
MTCDPNLNFSKQRQPGALSSHYARVRGRAGPQGSIVRSLTLHQEAVSTA*

Sequence

>CNT30502187
TCCACATTACAAATACATCAGAAGGAGAGGATTAAAATTTAACCCCAAAAAAAAGGTACAAAGTCTTGAAAATTCAGAAAGCTAAGGCTTCTTGAGCAAA
CTTAAGAAGACTTGTGGAATGGAATGGCTCTGATAATTATTTGGTGGTATACTGCAGCAAGTGCAGCTCCAATGAATGGTCCAACCCAAAAGATCCACTG
TTGAAAATCAACAAAAACAAATTACAACTTGTTAGCTATAGCTCTTTACCATGCCACAAAAAAGATATATTGTTCTTTTTTTTTTTTTTGTTACAATAAC
GATGACGTTCACACCAACTTGAGAGAAAGAAATGTTTCTTAAGATTTAGATTGAACACTTACGTGGTCGTCCCATGCCTGATCTGTGTTGTAGATGATCG
CAGCTCCAAGACTCCTAGCAGGGTTGATGCCAGTTCCGGTGATGGGAATAGTGGCCAAATGAACCAAGAACACCGCGAATCCAATGGGAAGTGGTGCCAA
AATCTGCAACACCATCCAAAATTTTCACAATGATGTCTTGTTTTTAATAAGAATTTTTATGTCTCTACGCTGAACAGTGTAAAGTTATATTGTCAAATCA
CCAAAAAGATAACTACAGATGATCGTCAACACACAAGTTATATGTTATTAGTTTGGTTAGATTGGTGGTAAGGACTCATTGTTTCATACTACAACCAAAG
AGCATGACTTGTGACCCAAATCTCAACTTCTCTAAACAAAGGCAGCCCGGTGCACTAAGCTCTCACTATGCGCGGGTCCGAGGAAGGGCCGGACCACAAG
GGTCTATTGTACGCAGCCTTACCCTACATCAAGAGGCTGTTTCCACGGCTTGAACCCGTGACCTCATGGTCACATTACAACAACTTTTCTCAACTTTTCT
AAAAGAAAGAGAATAAATTTTAAACCCTTTTTGGAGTAGATGAGAATTCTTTCAAACACAACTAGGACCACAACATTATGATATGGTGAATCCCTGCATT
ATTTCATCCAACAAAAAGAGCCAAACCTACAGTAGCTCATTCACGTGAACATCACCATCTTTAGCCAAACTCATATCATATTTTTCAATGGCATGGGTGC
CCACCAAGATAACACACAACACCAACTAAAAGCACTTGCTAACAAAACCAAACATGCCACATGCTAGCATGGACATCATTTTTGCTGCACCAAAAAAGTA
AGACCGCTTGTCCTAAATAATTTAACTTTTGTATACAATAACTTTTACACTATCGGTCTAATTTAACATATCATGTAGGTATCATGTCCTTTTCTCACGG
TTACTAATTTCACTTTTTATAAATAATTTTATAAATAGTTACCATAGTAGCTTAAAAAGTTTTCATACTATTAATGTATAAACTCTTATTATTATGGACA
GTCACTTATAGCCATCCTGAGTTCCTGATAATATAAAAATAAAAATTTCACTTTGTTTAAACTCTATCCTAAAACCAATCCACTCACCCACCCCCACAAC
TTCAGCTTCCCCAAAAGACCTTTGCACAAAGTAATACTGAATTCAGATAAGAAAGTGGGAAAACAGATTCAAGTAGAATTTACATCCAATTCTCTACTTA
GCCATATGGTCACATGGTCACAAGGGTGGTCAGTCGACCGCCCGTCGAAAAATTGCACTGTGTATATAGATAAAATATTATGTTTTAGAAGTATATAACA
CATATTGAACACCCTTTATCGGGAATTTTTTTCACTTCTTTCAAATTTGAATACGAGAAATTCCTAGCTTCGCCACTGTTCCCACTATACCAAAGCTTAC
AAGTACAGGGTCAACAACAGCAACAAAAAAAACCCCTAGTGTAATTTCACAAGTTGGGTCTGGGGAGGGTAGAGTGTACGCAAAACTTACCCCTACCTTC
AAGAAGGCAGAGAGGTTGTTTCCGGTAAACCCTCGGCTTAGGAAAGGTACAAGTACAGGGTCAAATGAAAACTAAATCTAACAGGTAAATTTTCAAGATA
AGCAATTTCATATCACAAAAGAGTAATGATATTGAACCAAAAACATGTTAAATATGAAGTTACAATAGAATACTTACAGGAACATGTGAGTCTCTGGCAT
TTCTCTTAGCATCAGTAGCAGAGAAAACAGTGTAAACAAGGACAAAAGTGCCAATAATTTCAGCACCAAGTCTCTGGTATGGACCAACCATGAATCCCTT
CACAACACCAGCACCACAGATTGCACCAAGGCATTGCATCACTATGTAGAAAACAGCCCTGGTTAAGGACAGTTTCCTTGCCAAGAACAATCCAAAGGTC
ACAGCTGGGTTAATGTGTCCTCCTGTTATTTCAAAACACAATATAAGTCAGTTTTAGAGAGAAATATATAAACCCCATATGTCCAAAAGGCAAATCAAAG
AAGGAAAAGACTCCCCTTTTTGTAATTTAGACAGAGAAAGTAAACCATTAAACATGTTCTCAACCTCTAAAACAGGAAAAAACTGATCTTTTTTGCAAGT
AAATTCAAGAATCCATTTAATTACTACTTGACAAAAGTATGATATACAAAGCAAGTAACTAAGAGCACAAATATGGTGAGCAAAAGAGAATAAGCAAGGA
GGATTAGCCACAAAAGGTCGTATTAAAGTATAAAGAGGTAAAGATACAAGCTTGAGCAAGGCAAATGACTAAGAACCAACAAGAATGGAAGGGAAAACTC
CATTCTTGTAATTTAGACACAGCAAGTAAACCAAATACATGTCTTGAACCTCTAAAACAGGGAAAAACTGAATCTTTTTATAAATACTCAAGAATCAATT
AAATTAGTTGACAAAAATATGATTCAAGTACAAAGTAAGTAACTACGAGCTAAAATATGGTGAGCAAAATAAAGGGAAAACAAAGAGAATCAGCCACAAA
AGGCCATAATTTAAAGGAACAAGCTTTAGCAAGGTAATGACTTAGAACCAACAAGAATCGACCATTCTTGTAATTTTGACATAGTAAAGTAAACCAATAA
CATGTTTTAAACTACTAAAAACAGGCTCAAATAAGTAACTACAAGCTCAAATATGGTGCCACAAAAGGCTATACTAGAAGTATAATAAGAGAAAAGGAAA
AAACTTTAGCAAGATAATGACTAAGAAACAACAATAACAACGACAACAACAACCACTTGTATTTCCACAAGTGGGGTCTGGTAGAGAGGTGACCCTCGGC
TAAAAAAAATAACTACGAAAAAACAAGAAATGGGAAGGAAAAAACTAACCTGAGATACCAGCAGTGCAGTAAACCAAAGCAAAGATCATACCACCAAAAG
CCCAAGCAACACCTTGAATACCAACTGAACTACACAGACTATCAGATCTCTTAAGACCCATAACAGTCAAGATAGTGATGTACAAAAACAAGAAAGTAGC
CATGAATTCTGCAATTCCAGCTCTGTAAAAAGACCATGATGATAACTCCCCTGGTTCAAACAAAGGAGCTGGTGGTGGCTCTTTGTAATCCTTATCTGTT
TGAGCAGCTGTTCCTAATGGCTGTGTTTCTCTGAATTTGTTAGCTCCAAGCTTAACATCTTCTTCTTTGTTTTCTGCCATTTGAACACTCACTAAACTTA
GCTTCTTCTTTTTTTCTCTCTTTTTTTGTGCTAAG