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Detailed information on CNT30609232


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO53|PIP12_MUSAC, E-value = 3e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Gossypium raimondiiCorylus avellana15.8226.3384.5284forward
CNT30515171Gossypium raimondiiJuglans regia45.7625.7483.54243forward
CNT30728378Gossypium raimondiiCorchorus capsularis54.2422.9187.15288forward
CNT30502187Gossypium raimondiiNicotiana attenuata22.983.3681.15122forward
CNT3095762Gossypium raimondiiSolanum tuberosum22.986.7784.43122forward
CNT30560772Gossypium raimondiiActinidia chinensis15.6328.2389.1683forward
CNT30145769Gossypium raimondiiMedicago truncatula32.246.9883.04171forward
CNT30646773Gossypium raimondiiRosa chinensis15.2521.9587.6581forward
CNT30212202Gossypium raimondiiHelianthus annuus12.4320.1287.8866forward
CNT30712987Gossypium raimondiiMalus domestica golden19.2128.5784.31102forward
CNT30573330Gossypium raimondiiVitis vinifera13.1822.9588.5770forward
CNT30706529Gossypium raimondiiPrunus avium43.6915.0881.9232forward
CNT30328555Gossypium raimondiiAsparagus officinalis13.5621.3686.1172forward
CNT30334008Gossypium raimondiiCynara cardunculus9.2321.7891.8449reverse complement

Expression of CNT30609232

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRLTRQARKMEPVVVQNSLSRHLESEPRSQLVASL*

>peptide 2 (38 aa)
ESHGRCAWRQWLRRQCKQEQRSYHQKPKQFLESQQLGT*

Sequence

>CNT30609232
ATGAGAGTCACGGGCGCTGCGCTTGGCGTCAGTGGCTGAGAAGACAGTGTAAACAAGAACAAAGATCATACCACCAAAAGCCCAAGCAATTCCTTGAATC
CCAACAGTTGGGCACTTAGTTTTTTCCTTAACAACTCCCATAACAGTCAAAATAGTGATATACAAGAAAAGGAAAGTCGCCACAAACTCGGCAATCCCAG
CCCTATAAAAGGACCATGAGGTTAACTCGCCAGGCTCGAAAAATGGAGCCGGTGGTGGTTCAGAATAGTCTTTCCCGTCATCTTGAGTCTGAGCCGCGGT
CCCAATTGGTTGCCTCTCTGTGAACTTGTTGGCTCCCAATCTAACATCCTCTTCTTTGCCCTCCATTTCCCTTCTTCTTTGCTTCCCTTTTTTAGTATCA
AAACATCCAAAAGGACAAAAAAACGTAAACTAAAGTGAAACAAAACTCTGGTTCTTTCTTTTAGAATTAGTGAGGGTCCTTCGGACTTGTAATGGTGATT
TTTATAGGCTAAGTTTGCTGAGAAAATGGTG