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Detailed information on CNT3096145


BLAST search results

BLAST vs Swiss-Prot:
sp|P43286|PIP21_ARATH, E-value = 2e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728842Solanum tuberosumCorchorus capsularis7.4226.887.193forward
CNT30404916Solanum tuberosumBeta vulgaris7.8124.288.7898forward
CNT30636643Solanum tuberosumCapsicum annuum27.6773.5290.78347forward
CNT30613102Solanum tuberosumArabis alpina7.7437.3183.5197forward
CNT30120694Solanum tuberosumCitrus clementina7.8140.1685.7198forward
CNT30334008Solanum tuberosumCynara cardunculus5.743284.7272reverse complement

Expression of CNT3096145

Peptides detected in this lncRNA

>peptide 1 (37 aa)
HCYNLTTKIQLINQNILFQKLTKKKLINLLTWSFQAL*

>peptide 2 (33 aa)
MYIMARTNDTFRAKKRPNVTAGLMCPPEIPAVQ*

>peptide 3 (92 aa)
PLLQFNNQNSINQPKYTISKINKKKTHKFTYLVIPSFVMSINNSSSKTPSRINTSSSNRNCSQVNHKHRKSNWKWRQYLQLSELKVNLTDHH*

>peptide 4 (63 aa)
MNIFLTLQDQLRVLGVDLGSLLVHIQYQLQCLYPFLALCFLAKWQLQRLLPFVHQKRRRRRIC*

Sequence

>CNT3096145
TCCACTGTTACAATTTAACAACCAAAATTCAATTAATCAACCAAAATATACTATTTCAAAAATTAACAAAAAAAAAACTCATAAATTTACTTACTTGGTC
ATTCCAAGCTTTGTGATGTCCATAAATAACAGCAGCTCCAAAACTCCTAGCAGGATTAATACCAGTTCCAGTAACAGGAATTGTAGCCAAGTGAACCATA
AACACCGCAAATCCAATTGGAAGTGGCGCCAGTACCTTCAATTATCAGAATTGAAGGTTAATTTAACGGATCATCATTAAACTTTACATGACAAAATTAT
ACTTACAGGAACGTGTGAGTCTCTGGCATTCCTCTTAGGATCAGTAGCAGCAAAAACAGTGTAAACAAGAATGAAAGTTCCAATAATCTCCGCACCCAAA
CCGGTACCAGTACTATATCCATCATTCAACTTATTAGCACCACCACCATACTGAACATAATAAGCTTTTTGAAAAGATTTAACCAATCCACAACCACAAA
TGGCTCCTAAACACTGAGCTACAATGTACATTATGGCCCGAACCAACGATACTTTTCGGGCCAAGAAAAGGCCGAATGTAACAGCAGGGTTAATGTGTCC
ACCAGAAATACCAGCAGTACAATAAACAAGTACAAAAATCATACCCCCAAATGCCCAAGCAATTCCAAGAATACCAACACCACCACATTGATCAGTGGAA
TTCTGACTGTTGTATCCAATAACAGTGAGGACAGTTATGTAGAGAAATAAAAGAGTAGCTATGAATTCAGCAATTATGGCTCTGTAAAATGAACATTTTC
CTAACTCTTCAGGTTAAATTAAGGGTGCTGGCGGCAATTCCAAGAATACCAACACCACCACATTGATCAGTGGAATTCTGACTGTTGTATCCAATAACAG
TGAGGACAGTTATGTAGAGAAATAAAAGAGTAGCTATGAATTCAGCAATTATGGCTCTGTAAAATGAACATTTTCCTAACTCTTCAGGATCAATTAAGGG
TGCTGGGGGTGGATCTTGGTAGTCTTTTGGTGCATATTCAGTACCAACTTCAATGTCTTTACCCATTTTTGGCTCTCTGTTTTTTGGCTAAGTGGCAACT
TCAACGTCTTTTGCCATTTGTACACCAAAAAAGAAGAAGAAGAAGAATATGTTAACTTTGAGGTTTGCTAAGTTAATTTTGTGATTTGAGAAAACAGAGT
GTAGTGGAATTGATGAGGAGTGAAAGGGGTATTTATGGAGAAAATTGGCCTTCT