Detailed information on CNT30622764


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39196|PIP14_ARATH, E-value = 6e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Daucus carotaCorylus avellana15.0720.6987.8866forward
CNT30728342Daucus carotaCorchorus capsularis22.1514.787.6397forward
CNT30234760Daucus carotaBrassica oleracea17.5825.2584.4277forward
CNT30211930Daucus carotaHelianthus annuus22.629.9185.8699forward
CNT30325169Daucus carotaAsparagus officinalis14.8424.5386.1565forward
CNT30334008Daucus carotaCynara cardunculus14.8428.8992.3165reverse complement

Expression of CNT30622764

Peptides detected in this lncRNA

>peptide 1 (61 aa)
NTSSAVDKCKDHTPESPCNALNPHRSTFIRCIRDSHNSQNRNIQEQESGYKFCNASPIKRP*

>peptide 2 (58 aa)
MRLVHHAHTEVLVVAPRSLDRALQKQMFQGESSQGTCWFQLCHPLLQSPLMLYFSKLC*

>peptide 3 (44 aa)
MLIQRCWWWLHVVSIVHCRSRCSKGNPLRVLVGSNFVILFFNPH*

>peptide 4 (36 aa)
KYQQCSRQVQRSYPRKPMQCLESPQKHIYQVHSRLP*

Sequence

>CNT30622764
AAATACCAGCAGTGCAGTAGACAAGTGCAAAGATCATACCCCCGAAAGCCCATGCAATGCCTTGAATCCCCACAGAAGCACATTTATCAGGTGCATTCGA
GACTCCCATAACAGTCAAAACAGAAACATACAAGAACAAGAAAGTGGCTATAAATTCTGCAATGCCAGCCCTATAAAAAGACCATGAGACTAGTTCACCA
TGCTCATACAGAGGTGCTGGTGGTGGCTCCACGTAGTCTCGATCGTGCATTGCAGAAGCAGATGTTCCAAGGGGAATCCTCTCAGGGTACTTGTTGGTTC
CAACTTTGTCATCCTCTTCTTCAATCCCCATTGATGCTTTATTTTAGCAAACTTTGTTAAGGGATAAGAAGTGCTGTGAGTTGGTGCTTAAGGTGAGTGT
TTTATAGGTGAAAATTTGAGCAAAATGCAGAACACAAA