Detailed information on CNT30423559


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070602Papaver somniferumQuercus suber14.4421.5986.7668forward
CNT30502187Papaver somniferumNicotiana attenuata28.663.7185.93135forward
CNT3095762Papaver somniferumSolanum tuberosum29.947.8282.98141forward
CNT30234760Papaver somniferumBrassica oleracea13.821.3190.7765forward
CNT30145769Papaver somniferumMedicago truncatula40.3452.282.63190forward
CNT30211930Papaver somniferumHelianthus annuus32.4846.2283.66153forward
CNT30328555Papaver somniferumAsparagus officinalis14.4420.1888.2468forward
CNT30334008Papaver somniferumCynara cardunculus16.7735.1192.4179reverse complement

Expression of CNT30423559

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MNLILLVQRKELVVALCNLCPQSSELLFRLVVSLRTWIWGSDGFYSQGTGRKCIGGPANSLFFRFV*

>peptide 2 (37 aa)
LRYRRYSRQGQRSYHQKPKQYLEYQQTGTCFWHQQHP*

Sequence

>CNT30423559
CCTGAGATACCGGCGGTACAGTAGACAAGGGCAAAGATCATACCACCAAAAGCCCAAGCAATACCTTGAATACCAACAGACTGGCACTTGTTTTTGGCAC
CAGCAACACCCATAACAGTCAAGACGGAGATGTATAGGAACAGAAAAGTAGCTATGAATTCAGCAATACCAGCTCTGTAGAAAGACCATGAACCTAATTC
TCCTGGTTCAAAGAAAGGAGCTGGTGGTGGCTCTCTGTAATCTTTGTCCTCAGTCATCTGAGCTGCTGTTCCGATTGGTTGTCTCTCTGAGAACTTGGAT
ATGGGGGAGTGATGGATTTTATAGTCAAGGTACTGGACGGAAATGTATTGGTGGTCCTGCTAATTCACTGTTCTTCCGTTTTGTATGATTGAGATGGGAG
ATCAGTACACTCTCTTTCTTCGATGTCATTAGCAACGGGTGGCACCGCCCAATCACGGCGTTAGTTTTCTG