Detailed information on CNT30360562


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 9e-111

BLAST vs NONCODE:
NONSTUT002514, E-value = 3e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Lactuca sativaJuglans regia40.2924.2781.74367forward
CNT30701229Lactuca sativaQuercus lobata71.1333.3381.02648forward
CNT30373962Lactuca sativaArabidopsis thaliana41.4933.983.6378forward
CNT30500934Lactuca sativaCoffea canephora22.2812.6685.71203forward
CNT30378916Lactuca sativaManihot esculenta70.9150.3579.88646forward
CNT30631012Lactuca sativaVigna unguiculata70.6950.7179.35644forward
CNT30561789Lactuca sativaActinidia chinensis33.3727.2986.84304forward
CNT30238815Lactuca sativaBrassica oleracea29.9740.8183.52273forward
CNT30311404Lactuca sativaCamelina sativa45.5563.1781.93415forward
CNT3077068Lactuca sativaBrassica juncea70.5863.3580.72643forward
CNT30264606Lactuca sativaBrassica rapa57.4161.0380.88523forward
CNT30605341Lactuca sativaGossypium raimondii54.8845.8380.6500forward
CNT30648173Lactuca sativaRosa chinensis71.1337.3179.78648forward
CNT30204126Lactuca sativaHelianthus annuus37.4366.686.8341forward
CNT30409807Lactuca sativaPapaver somniferum55.9869.282.16510forward
CNT30326027Lactuca sativaAsparagus officinalis37.5460.1182.75342forward
CNT30119392Lactuca sativaCitrus clementina44.4644.0781.23405forward
CNT3035896Lactuca sativaCucumis melo32.1632.5682.59293forward
CNT30112551Lactuca sativaFicus carica42.2662.282.86385forward

Expression of CNT30360562

Peptides detected in this lncRNA

>peptide 1 (74 aa)
GHKVGSISPSIVSNRVSKMVKQILNRTLPCNNSLNKKPKHRKHRQSSIFKLLNLQFSKSFRVITNPSGSKDPPG*

>peptide 2 (51 aa)
MSPGQPKVRRCPTRSHRGIHRSSMMGFAPRMGPSTLDDLVHTCLKMVITVS*

>peptide 3 (29 aa)
MAHREWITSSSRFLANVSGSAESPAVSHP*

>peptide 4 (72 aa)
MNLETRRTSICEFYQMLCGALLTVRRMVKRPPLKLPVFRTSSFCGFKACWPANADCWIAVVAISFEGFVEMVV

Sequence

>CNT30360562
CCGGGCACAAAGTTGGTAGCATAAGCCCAAGCATTGTTAGCAACCGGGTCAGCAAGATGGTCAAACAAATTCTCAATCGGACCCTTCCCTGTAACAATAG
CCTGAACAAAAAACCCAAACATAGAAAACATCGCCAATCTTCCATTTTTAAGCTCCTTAACCTTCAATTCAGCAAAAGCTTCCGGGTCATCACCAATCCA
AGCGGGTCAAAAGACCCACCCGGATAAATCTTATCAAGGCCTTCACCAAGCGGACCCCCACCAACCCGGTATCCTTCAATGAGCCCCATGAGGACAACCT
GAGATGCCCAGATAGCAAGAATGCTTTGGGCATGGATCAAATTAGGGGTTTCCAAGGTAGTCAAGGCCACCTTCTGAGAAAATCTGGGAACCCGCCTTGA
ACCAGACTGCTTCACCGAATGTGACACCGTTTTTGGAGAGAAGCTCGGGGAAGACGCACCCGAGTGCACCCAGCATGGCCCACCGAGAGTGGATCACTTC
GAGCTCACGGTTCTTGGCAAATGTCTCCGGGTCAGCCGAAAGTCCGGCGGTGTCCCACCCGTAGTCACCGGGGAATTCACCGGTCAAGTATGATGGGGTT
TGCTCCGAGAATGGGCCCAAGTACTTTGGACGATCTGGTCCATACCTGTTTAAAGATGGTGATTACAGTTAGTTAGTTCTGGTATCGATATATGAATTTG
GAAACAAGAAGAACATCGATTTGTGAGTTTTACCAAATGCTTTGCGGTGCACTTTTGACTGTGCGGCGCATGGTGAAGCGGCCGCCATTGAAGCTGCCGG
TCTTCCGGACGAGCTCGTTCTGTGGCTTCAAGGCCTGTTGGCCGGCGAATGCTGACTGTTGGATTGCGGTGGTTGCCATTTCTTTTGAGGGGTTTGTAGA
AATGGTAGTTT