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Detailed information on CNT30298671


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521859Triticum aestivumSetaria italica68.3756.3387.79467forward
CNT30393744Triticum aestivumTriticum turgidum10079.8899.85683forward
CNT30589923Triticum aestivumMusa acuminata58.2787.6785.68398forward
CNT30556097Triticum aestivumOryza glaberrima67.547.5789.37461forward
CNT30246635Triticum aestivumAvena sativa57.3980.1685.2392forward
CNT30664673Triticum aestivumTriticum dicoccoides99.8562.2399.85682forward
CNT30684778Triticum aestivumTriticum urartu10073.8499.71683forward
CNT30722048Triticum aestivumTriticum spelta39.6864.2291.88271forward
CNT30369948Triticum aestivumOryza glumipatula65.7444.9489.09449forward
CNT30575846Triticum aestivumOryza barthii68.3752.8387.79467forward
CNT30579007Triticum aestivumEchinochloa crusgalli67.554.8290.02461forward
CNT30116796Triticum aestivumOryza nivara65.7448.5491.54449forward

Expression of CNT30298671

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGPSPRGPPPTR*

>peptide 2 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30298671
TGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTC
TCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACG
GACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAG
AGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGA
GCTCGGCGGCGGTGTCAGGGCCCTCGCCGAGGGGCCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAG
GATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAAC
TTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAG