Detailed information on CNT30722048


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188104Triticum speltaSecale cereale84.8352.1992.74358forward
CNT30298671Triticum speltaTriticum aestivum64.2239.6891.88271forward
CNT30223937Triticum speltaHordeum vulgare60.952.1389.49257forward
CNT30393936Triticum speltaTriticum turgidum83.4139.690.91352forward
CNT30665030Triticum speltaTriticum dicoccoides64.2234.8891.88271forward
CNT30684778Triticum speltaTriticum urartu76.7835.0390.43324forward

Expression of CNT30722048

SRR9114152: 76.29 RPKM

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGLTHLASGGEVGGEGPRVVVDRVITPRGGAEEAGRLVQRRRGHFAGGWG

>peptide 2 (43 aa)
YAVANVPFHELEVPYTPCQLMISSNVLMIHDSSIHLLVHLVLN*

Sequence

>CNT30722048
CGTATGCCGTTGCGAATGTCCCGTTTCATGAGCTTGAAGTACCATATACGCCATGCCAGTTGATGATCTCGAGTAATGTACTAATGATACACGATTCTTC
CATCCATTTGCTCGTGCATCTCGTGCTTAATTAATTTACATTGCGCGCAGCCAGCGAGAGGTCATCTCGCTCGCTCGATCATGGTACAAATAAACACACA
AAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACAGATGGCTTAACACATTTAGCTTCCGGGGGC
GAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACCGGGTCATCACGCCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAGCGCCGACGCGGCC
ATTTCGCTGGTGGCTGGGGCTG