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Detailed information on CNT30664673


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298671Triticum dicoccoidesTriticum aestivum62.2399.8599.85682forward
CNT30393744Triticum dicoccoidesTriticum turgidum70.2690.06100770forward
CNT30684778Triticum dicoccoidesTriticum urartu69.882.799.74765forward
CNT30369948Triticum dicoccoidesOryza glumipatula51.6456.6688.34566forward
CNT30116796Triticum dicoccoidesOryza nivara48.7257.7390.26534forward

Expression of CNT30664673

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 2 (40 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGPSPRGPPPTR*

>peptide 3 (76 aa)
MGNISSTYQMLWGALLTVRRMVMRPPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACELSEMNWWMVCVWV

>peptide 4 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30664673
GATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCT
CGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGG
ACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGA
GGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAG
CTCGGCGGCGGTGTCGGGGCCCTCGCCGAGGGGCCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGG
ATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACT
TGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAA
CGTCTCGGGGTCAGCAGACAATCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACTTGGGACGGTCAGGGCCGTACCTACACATC
CATTCATTCATCAGCAAGGTGCATTAGTCCAATGGTGTATCTTCATCAGGGGGAGCGAACCATGCATGGGAAATATTAGTAGTACGTACCAGATGCTCTG
GGGCGCGCTCTTGACGGTCCGGCGCATGGTGATGCGGCCGCCAAAGTCGCCGACGCTGCGGACGAGGTCATCGCGCCGCGGGGCGGTGCCGAGGAAGCTG
GTCGTCTGGTGCAGCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCAGTGAGATGAACTGGTGGATGGTGTGTGTTTGGGTG