« Back to Triticum turgidum search


Detailed information on CNT30393744


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298671Triticum turgidumTriticum aestivum79.8810099.85683forward
CNT30589923Triticum turgidumMusa acuminata54.27102.285.99464forward
CNT30556097Triticum turgidumOryza glaberrima69.7161.5188.93596forward
CNT30246635Triticum turgidumAvena sativa59.42103.8986.42508forward
CNT30664673Triticum turgidumTriticum dicoccoides90.0670.26100770forward
CNT30684778Triticum turgidumTriticum urartu93.3386.2799.62798forward
CNT30369948Triticum turgidumOryza glumipatula62.8153.7588.27537forward
CNT30103254Triticum turgidumOryza rufipogon63.8643.6187546forward
CNT30579007Triticum turgidumEchinochloa crusgalli70.1871.3489.83600forward
CNT30116796Triticum turgidumOryza nivara62.4657.7390.26534forward

Expression of CNT30393744

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGPSPRGPPPTR*

>peptide 2 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 3 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30393744
ATGAGCTTGAAGTACCATATACGCCATGCAGTTGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAA
TTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTA
CAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGC
GAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGCCCTCGCCGAGGGGCCCGCCACCAACACGGTAGCCCTCGATGAAGCCC
ATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGG
CGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGA
GTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGG
TACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGT