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Detailed information on CNT30116796


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298671Oryza nivaraTriticum aestivum48.5465.7491.54449forward
CNT30393744Oryza nivaraTriticum turgidum57.7362.4690.26534forward
CNT30552961Oryza nivaraOryza glaberrima101.9588.6397.77943forward
CNT30246635Oryza nivaraAvena sativa51.6897.7583.26478forward
CNT30664673Oryza nivaraTriticum dicoccoides57.7348.7290.26534forward
CNT30453579Oryza nivaraSaccharum spontaneum56.9766.7184.06527forward
CNT30684778Oryza nivaraTriticum urartu57.5157.5189.85532forward
CNT30347916Oryza nivaraEragrostis tef19.6830.3395.6182forward
CNT30369948Oryza nivaraOryza glumipatula70.9265.6798.02656forward
CNT30575846Oryza nivaraOryza barthii91.4695.797.28846forward

Expression of CNT30116796

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKVSGPSPSGPPPTR*

>peptide 2 (35 aa)
SWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

>peptide 3 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

Sequence

>CNT30116796
TAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAG
CAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACACAATTAAGGTACATACATACATGCACTGCTGC
AACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGAC
GAAGTTGGTGGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACG
AAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGTGTCAGGGCCCTCGCCGAGCGGGCCGCCGC
CGACGCGGTAGCCCTCGACGAATCCCATGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTC
GAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCC
AGCGCCCCCAGCATTGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGT
AGTCTCCCGGGAACTCTCCGGTCAGGAAGCTGGTGGTCTGGTGCAGCGCCGACGCGGCCATCGTTCTAACGAGGGCGATGCGGCGGCGGTTGGGTTGGTT
TTTTGTGGTGTGTGGTGGAGATGGG