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Detailed information on CNT30369948


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187133Oryza glumipatulaSecale cereale33.9348.5791.45339forward
CNT30298671Oryza glumipatulaTriticum aestivum44.9465.7489.09449forward
CNT30393744Oryza glumipatulaTriticum turgidum53.7562.8188.27537forward
CNT30589923Oryza glumipatulaMusa acuminata45.55100.2289.89455forward
CNT30246635Oryza glumipatulaAvena sativa46.6595.385.84466forward
CNT30664673Oryza glumipatulaTriticum dicoccoides56.6651.6488.34566forward
CNT30453579Oryza glumipatulaSaccharum spontaneum52.1565.9586.18521forward
CNT30684778Oryza glumipatulaTriticum urartu53.2557.5187.78532forward
CNT30100939Oryza glumipatulaOryza rufipogon33.8342.78100338forward
CNT30579324Oryza glumipatulaEchinochloa crusgalli34.1340.8492.08341forward
CNT30116796Oryza glumipatulaOryza nivara65.6770.9298.02656forward
CNT30556505Oryza glumipatulaPanicum hallii48.8569.8185.45488forward

Expression of CNT30369948

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MHVRYVPDALGRALDGAAHGDAATGVADAADELIPARGGAEEAGGLVQRRRGHRSNEGDAAAVGLVF

>peptide 2 (83 aa)
MLAIAVYIYTVLMFVYTCMYATYQMLWGALLTVRRMVMRPPESPTRRTSSSRRGAVPRKLVVWCSADAAIVLTRAMRRRLGWFF

>peptide 3 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

>peptide 4 (84 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKVSGGPPPTR*

Sequence

>CNT30369948
GACAGAAAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGC
AGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGC
GTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAAC
ATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGTGTCAGGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAATC
CCATGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTG
CGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATCGCCCACCGC
GAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCA
GGTACTTGGGACGGTCAGGTCCATACCTGCACATATATATACTTGTATGTTAGCAATTGCAGTGTACATATATACAGTACTTATGTTTGTATATACATGC
ATGTACGCTACGTACCAGATGCTCTGGGGCGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCACCGGAGTCGCCGACGCGGCGGACGAGCTCATCCC
GGCGAGGGGCGGTGCCGAGGAAGCTGGTGGTCTGGTGCAGCGCCGACGCGGCCATCGTTCTAACGAGGGCGATGCGGCGGCGGTTGGGCTGGTTTTTTG