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Detailed information on CNT30579007


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696045Echinochloa crusgalliOryza sativa67.0653.1686.7564forward
CNT30522251Echinochloa crusgalliSetaria italica73.9683.694.53622forward
CNT30298671Echinochloa crusgalliTriticum aestivum54.8267.590.02461forward
CNT30393744Echinochloa crusgalliTriticum turgidum71.3470.1889.83600forward
CNT30556097Echinochloa crusgalliOryza glaberrima72.0662.5493.4606forward
CNT30664531Echinochloa crusgalliTriticum dicoccoides71.787.5290.05603forward
CNT30685843Echinochloa crusgalliTriticum urartu62.0768.6889.85522forward
CNT30103254Echinochloa crusgalliOryza rufipogon65.9944.3388.47555forward
CNT30575846Echinochloa crusgalliOryza barthii68.8565.591.54579forward
CNT30116851Echinochloa crusgalliOryza nivara69.5666.8691.97585forward

Expression of CNT30579007

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MGPFPVTMACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSPSGPPPTR*

>peptide 2 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30579007
CTTGAGAAAGAATCAATGTCGATTGATCAAGCCATGGTTCACTCACAAATGTTACACGTACCATTGATTCATCAGCTGACATAAGCATCTGTGCCTAGTT
TACAATTTCACACCACACGTACAGTACAGGCAGCTGCTGATCTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGGCGACTGGG
TCCGCGACGTGGTCGAAGAGGTTCTCGATGGGCCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCT
TGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCAT
GAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCG
CCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCTTGGCCAGGATCTCCGGGAACACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGGAGT
GGATCACCTCCAGCTCACGGTTGCGGGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTA
CGACGGCGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTGCTTCTCTCC
GGCGCACGACGTGTACGTGGTCAGTGGGATTGTTGAGCGAT