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Detailed information on CNT30246635


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298671Avena sativaTriticum aestivum80.1657.3985.2392forward
CNT30393744Avena sativaTriticum turgidum103.8959.4286.42508forward
CNT30589923Avena sativaMusa acuminata91.6298.6883.04448forward
CNT30665401Avena sativaTriticum dicoccoides103.0764.2985.91504forward
CNT30877Avena sativaZea mays99.857.3483.81488forward
CNT30684778Avena sativaTriticum urartu97.7551.6886.61478forward
CNT30369948Avena sativaOryza glumipatula95.346.6585.84466forward
CNT30116796Avena sativaOryza nivara97.7551.6883.26478forward

Expression of CNT30246635

Peptides detected in this lncRNA

>peptide 1 (63 aa)
TWSKRFSIGPLPVTMACTKKPNMENMARRPFLSSLTLSSAARAATNTVALDEAHEHHLGRPDG*

>peptide 2 (51 aa)
NVVEEVLDRSLAGDDGLHEETEHGEHGEAAVLELLDLELGCAGRHQHGSPR*

>peptide 3 (46 aa)
MPFLDKISGNTHPSAPSIAHLEWMTSSSLFFANVSGSADNPAVSHP*

Sequence

>CNT30246635
AACGTGGTCGAAGAGGTTCTCGATAGGTCCCTTGCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGC
TCCTTGACCTTGAGCTCGGCTGCGCGGGCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACCACTTGGGTCGCCCAGATGGCTAGAATGCTT
TGTGCGTGCACAAGGTTGGGGTTGCCTAGATAGTCGAGACCGCCCTCGGAAAAGATCTGAGCGCCAGCCTTGAACCATACGGCCTCACCGAACTTGATGC
CGTTCTTGGACAAGATCTCGGGAAACACACATCCAAGTGCGCCAAGCATCGCCCACCTGGAGTGGATGACCTCGAGCTCCCTGTTCTTTGCAAACGTCTC
CGGGTCCGCCGACAACCCTGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAAGTAAGATGGGGTCTGCTCCGAGAATGGGC