CANTATAdb - search

Detailed information on CNT30556097

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-146

BLAST vs NONCODE:
NONBNAT005173, E-value = 4e-36

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522251	Oryza glaberrima	Setaria italica	63.78	83.06	90.78	618	forward
CNT30298671	Oryza glaberrima	Triticum aestivum	47.57	67.5	89.37	461	forward
CNT30393744	Oryza glaberrima	Triticum turgidum	61.51	69.71	88.93	596	forward
CNT30100870	Oryza glaberrima	Oryza rufipogon	50.46	90.39	99.59	489	forward
CNT30579007	Oryza glaberrima	Echinochloa crusgalli	62.54	72.06	93.4	606	forward

Expression of CNT30556097

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

>peptide 2 (38 aa)
ATLACSRELGPAPIYWVDAQIGIVLAGFVVDPIITIHH*

>peptide 3 (92 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKVSGSSARPSPSGPPPTR*

Sequence

>CNT30556097
GCAACGCTGGCGTGCTCGCGTGAACTGGGTCCCGCACCGATTTATTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAA
TAACGATACATCATTAATTCGATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAAT
TAAGCTAGAAATCTCCTCGATCGATCACACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGGTCGGTGCGTGG
CTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCAGGCGTT
GTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCG
AGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGTGTCAGGGTCGTCGGCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCT
CGACGAATCCCATGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGA
GAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATC
GCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACT
CTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAGGTCCATACC