Detailed information on CNT30589923


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 1e-72

BLAST vs NONCODE:
NONBNAT007398, E-value = 4e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522168Musa acuminataSetaria italica99.3451.7886.7451forward
CNT30187133Musa acuminataSecale cereale65.4242.5590.57297forward
CNT30298671Musa acuminataTriticum aestivum87.6758.2785.68398forward
CNT30393744Musa acuminataTriticum turgidum102.254.2785.99464forward
CNT30556099Musa acuminataOryza glaberrima66.0830.7792300forward
CNT30246635Musa acuminataAvena sativa98.6891.6283.04448forward
CNT30665821Musa acuminataTriticum dicoccoides102.260.0385.56464forward
CNT30877Musa acuminataZea mays99.345387.58451forward
CNT30229088Musa acuminataAnanas comosus66.0834.4895300forward
CNT30685647Musa acuminataTriticum urartu92.7356.7487.89421forward
CNT30369948Musa acuminataOryza glumipatula100.2245.5589.89455forward
CNT30100939Musa acuminataOryza rufipogon66.0837.9792300forward
CNT30575846Musa acuminataOryza barthii66.0833.9492300forward
CNT30579738Musa acuminataEchinochloa crusgalli99.3438.5586.47451forward
CNT30498680Musa acuminataDigitaria exilis56.6135.2191.05257forward
CNT30116851Musa acuminataOryza nivara104.8554.487.39476forward
CNT30603927Musa acuminataOryza punctata66.0837.8392.67300forward

Expression of CNT30589923

Peptides detected in this lncRNA

>peptide 1 (79 aa)
EVVVEVLDGALAGHDGLHEEAEHGEHGKAAVLDLLHLELRERVGVVGQAQGPSTKPISTTWQAQMARMLCAWIRLGLPR*

>peptide 2 (32 aa)
RGGRRGSRWGPCRSRWPARRSRTWRTWQGGRS*

>peptide 3 (85 aa)
MGPLPVTMACTKKPNMENMARRPFLISFTLSSANASGSSARPRGPPRSPSAPPGRPRWRGCSARGSGWGCPGSRGRPPRRSAPRP*

Sequence

>CNT30589923
GCGAGGTGGTCGTAGAGGTTCTCGATGGGGCCCTTGCCGGTCACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCAAGGCGGCCGTTCTTGA
TCTCCTTCACCTTGAGCTCCGCGAACGCGTCGGGGTCGTCGGCCAGGCCCAGGGGCCCTCCACGAAGCCCATCAGCACCACCTGGCAGGCCCAGATGGCG
AGGATGCTCTGCGCGTGGATCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCCGAGAAGATCTGCGCCCCGGCCTTGAACCACACCGCCTCCCCGA
ACTTGACGCCGTTCTTGGCCAGGATCTCCGGGAAGACGCACCCCAGCGCCCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCTCCCGGTTCTTCGC
GAACGTCTCCGGGTCCGCCGACAGCCCCGCCGTGTCCCACCCGTAGTCGCCCGG