Detailed information on CNT30116841


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691986Oryza nivaraOryza sativa24.5660.3399.45181forward
CNT30188135Oryza nivaraSecale cereale54.1447.9691.23399forward
CNT30298089Oryza nivaraTriticum aestivum60.2464.0790.32444forward
CNT30142786Oryza nivaraLolium perenne61.4742.5886.75453forward
CNT30345514Oryza nivaraEragrostis tef39.4859.6386.6291forward
CNT30369866Oryza nivaraOryza glumipatula61.3361.599.78452forward
CNT30498680Oryza nivaraDigitaria exilis52.9253.4291.03390forward
CNT30603824Oryza nivaraOryza punctata60.2472.297.07444forward

Expression of CNT30116841

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MHCCNCNCRLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARMLCACTRLGFPR*

>peptide 2 (49 aa)
RTDLLGRRTNWHRFSWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

Sequence

>CNT30116841
CCCGCACCGATTTATTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCT
TGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACAC
ACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGTTGGTGGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCG
ACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGATGCTCTGCGCGTGCA
CCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGA
CAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATTGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCC
GATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAG
GTCCATACCTGCACATATATATACTTGTATGTTAGCA