Detailed information on CNT30498680


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 5e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188135Digitaria exilisSecale cereale54.9348.290.02401forward
CNT30298089Digitaria exilisTriticum aestivum54.9357.8688.78401forward
CNT30589923Digitaria exilisMusa acuminata35.2156.6191.05257forward
CNT30250509Digitaria exilisAvena sativa49.8658.2484.62364forward
CNT30142786Digitaria exilisLolium perenne53.9737.0386.29394forward
CNT30345514Digitaria exilisEragrostis tef42.3363.3287.7309forward
CNT30369866Digitaria exilisOryza glumipatula55.8955.5191.42408forward
CNT30100939Digitaria exilisOryza rufipogon37.2634.4391.54272forward
CNT30116841Digitaria exilisOryza nivara53.4252.9291.03390forward
CNT30603824Digitaria exilisOryza punctata55.8966.3491.42408forward

Expression of CNT30498680

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGPLPVTMACTKNPNMENMARMLCACTRFGLPR*

>peptide 2 (70 aa)
TWPHRWTGDDSLMKKVHMVDSSVGTYTHSLHHFTSRHHVVHSRHLADLTSRKHRAIRRRVQLLHAYCTTS*

>peptide 3 (29 aa)
MAHREWITSSSRLRANVSGSAESPAVSHP*

Sequence

>CNT30498680
AACATGGCCACATCGATGGACAGGCGATGATTCACTCATGAAGAAGGTACACATGGTTGATTCATCAGTTGGCACGTACACTCATAGTTTACATCATTTT
ACATCACGTCATCACGTAGTACACAGCAGGCATCTTGCTGATCTGACTAGCAGAAAGCACAGAGCAATACGCCGGCGCGTGCAACTACTACACGCCTACT
GCACAACAAGCTGACACGATCACTTGCCGGGGACGAAGTTGGTGGCATAGGCCCAGGCATTGTTGGCGACGGGGTCAGCAACGTGGTCGAAGAGGTTCTC
AATGGGGCCCTTGCCAGTAACAATGGCCTGCACAAAGAATCCGAACATGGAGAACATGGCGAGGATGCTCTGCGCGTGCACCAGGTTCGGGTTGCCCAGG
TAGTCGAGCCCGCCCTCGGAGAAGATCTGAGCTCCGGCCTTGAACCACACGGCCTCTCCGAACTTGACGCCGTTCTTGGCGAGGATCTCCGGGAAGACGC
AGCCCAGGGCGCCCAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCACGGTTGCGCGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCCGTGTCCCA
CCCGTAGTCGCCGGGGAACTCGCCGGTGAGCACGACGAGCACACTGGCCTGGTCAGTGAGGGAGATTGTTTCAGTCTAGCTGAGTGGTGGGAATGGCCGG
TGAGGGAGGAGATCTTTATACGGCCGGGGA