Detailed information on CNT30603824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-79

BLAST vs NONCODE:
NONATHT001041, E-value = 5e-13

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188135Oryza punctataSecale cereale67.1549.6492.01413forward
CNT30298089Oryza punctataTriticum aestivum73.9865.6691.21455forward
CNT30142786Oryza punctataLolium perenne72.8542.1186.61448forward
CNT30345514Oryza punctataEragrostis tef50.4163.5287.42310forward
CNT30369866Oryza punctataOryza glumipatula92.277.1494.89567forward
CNT30498680Oryza punctataDigitaria exilis66.3455.8991.42408forward
CNT30116841Oryza punctataOryza nivara72.260.2497.07444forward

Expression of CNT30603824

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MTEIKLESPRSITHTQLRYIHARLQLQLQGRCVATTSVHMLGWHHLVALALTCRGRSWWRRPRRCWRRGRRRGRRGSRWGPCR*

>peptide 2 (33 aa)
MGPLPVTMAWMKKPNMENMARMLCACTRLGLPR*

Sequence

>CNT30603824
TGATGACAGAAATTAAGCTAGAATCTCCTCGATCGATCACACACACACAATTAAGGTACATACATGCACGTCTGCAACTGCAACTGCAGGGTCGGTGCGT
GGCTACTACAAGTGTACACATGCTTGGTTGGCATCATCTCGTGGCGCTAGCTCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGG
CGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGATGAAGAAGCCGAACATGGAGAACATGGCGAGGAT
GCTCTGCGCGTGCACCAGGTTGGGGTTACCCAGGTAGTCGAGGCCTCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCGCCGAACTTG
ACCCCGTTCTTTGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCGAGCGAACG
TCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCGCCCGGGAACTCTCCGGTCAGGTACGACGGCGTCTGCTCCGAGAACGGGCCCAGGTA
CTTGGGACGGTCAGG