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Detailed information on CNT30369866


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188135Oryza glumipatulaSecale cereale55.7849.2891.46410forward
CNT30298089Oryza glumipatulaTriticum aestivum61.965.6690.55455forward
CNT30556099Oryza glumipatulaOryza glaberrima56.0542.2699.03412forward
CNT30250509Oryza glumipatulaAvena sativa48.7157.2884.64358forward
CNT30665030Oryza glumipatulaTriticum dicoccoides44.3541.9690.49326forward
CNT30142786Oryza glumipatulaLolium perenne60.9542.1187.28448forward
CNT30229088Oryza glumipatulaAnanas comosus43.9537.1392.57323forward
CNT30345514Oryza glumipatulaEragrostis tef42.4563.9387.5312forward
CNT30100870Oryza glumipatulaOryza rufipogon55.7875.7999.51410forward
CNT30575846Oryza glumipatulaOryza barthii56.3346.8398.55414forward
CNT30498680Oryza glumipatulaDigitaria exilis55.5155.8991.42408forward
CNT30116841Oryza glumipatulaOryza nivara61.561.3399.78452forward
CNT30603824Oryza glumipatulaOryza punctata77.1492.294.89567forward

Expression of CNT30369866

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SYNNDTSFIRSSLGCGLRLTLNLDPKKQR*

>peptide 2 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

>peptide 3 (74 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARMLCACTRLGFPR*

Sequence

>CNT30369866
ATCCTATAATAACGATACATCATTTATTCGATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGAAA
GAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGGTCGG
TGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCC
AGGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAA
CATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCC
TCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGT
TCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAA
CGGGCCCAGGTACTTGGGACGGTCAGGTCCATACC