Detailed information on CNT30188135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-62

BLAST vs NONCODE:
NONBNAT007398, E-value = 5e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298089Secale cerealeTriticum aestivum77.0492.595.94641forward
CNT30250509Secale cerealeAvena sativa41.5955.3687.57346forward
CNT30142786Secale cerealeLolium perenne66.2351.7988.02551forward
CNT30685565Secale cerealeTriticum urartu49.8852.9396.87415forward
CNT30369866Secale cerealeOryza glumipatula49.2855.7891.46410forward
CNT30498680Secale cerealeDigitaria exilis48.254.9390.02401forward
CNT30116841Secale cerealeOryza nivara47.9654.1491.23399forward
CNT30603824Secale cerealeOryza punctata49.6467.1592.01413forward

Expression of CNT30188135

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADSPAVSHP*

>peptide 2 (37 aa)
RFMSLKYHIRHACQLMILSNVLNDTRFFHPFARAPRA*

>peptide 3 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

Sequence

>CNT30188135
CCGTTTCATGAGCTTGAAGTACCATATACGCCATGCATGCCAGTTGATGATCTTGAGTAATGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGT
GCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTA
CACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAG
TTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGA
AGCCGAACATGGAGAACATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGC
CTTGAACCACACTGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGCGAGTGGATC
ACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCGGCCGACAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACG
GGGTCATCGCGGCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAGCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCAGTG
AGATGGACTGGTGGATGGTGTGTGTTTGGGTG