Detailed information on CNT30142786


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188135Lolium perenneSecale cereale51.7966.2388.02551forward
CNT30298089Lolium perenneTriticum aestivum55.7385.5788.87593forward
CNT30393827Lolium perenneTriticum turgidum31.3936.8791.32334forward
CNT30245298Lolium perenneAvena sativa32.3340.5291.86344forward
CNT30665030Lolium perenneTriticum dicoccoides31.5843.2491.37336forward
CNT30684718Lolium perenneTriticum urartu31.3948.9791.02334forward
CNT30369866Lolium perenneOryza glumipatula42.1160.9587.28448forward
CNT30498680Lolium perenneDigitaria exilis37.0353.9786.29394forward
CNT30116841Lolium perenneOryza nivara42.5861.4786.75453forward
CNT30603824Lolium perenneOryza punctata42.1172.8586.61448forward

Expression of CNT30142786

Peptides detected in this lncRNA

>peptide 1 (32 aa)
NHKFGFSSYVVLSTTQFLQKHHTSIQEMCMYS*

>peptide 2 (33 aa)
MGPLPVTMACTKKPNMENMARMLCACTRLGLPR*

>peptide 3 (36 aa)
MIVQIITQSTCSYTLIHDVQVHMHISPGGRTDGYLI*

>peptide 4 (29 aa)
MIVPLLTFIHRRTLCLITLRTTSETGLAQ*

>peptide 5 (46 aa)
MPFLDRISGNTHPSAPSIAHLEWITSSSLFLANVSGSADNPAVSHP*

Sequence

>CNT30142786
ACAACCATAAATTTGGTTTTTCTTCTTATGTAGTTCTAAGTACAACGCAATTTCTACAAAAACATCACACGAGTATTCAGGAGATGTGTATGTATTCATA
GAATAATTTTTTTGGTTATTTGAAACACACAGAAGTACAATTTTCATATATTTCAAAAACTTGGAGCATAGGCGCTTGGATGCACCAAATCTTCTCTCGA
GGGTAGGGGAACACTAGGGAGGGATGACTCAACTCCAAACTTATGTCTCAATGCGGTTGAAACCTACAAAATATATTGAAACCTGAGCCCAAGCATGTAT
AAATATTCTCCGTGTGCTAACCTCTGAGATCACGTTTCTTCCTTCTAGCAACGATCCGGACTTAACTACTCTCTTCATTATAGATGATTGTTCCATTATT
GACATTCATTCATCGGCGTACCTTGTGCTTAATTACATTGCGCACAACTAGCGAGACGGGACTCGCTCAATGATAGTACAAATAATAACACAAAGTACGT
GCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGCCCGGTGGTCGGACGGATGGCTATCTCATTTAACTTCCAGGAGCGAAGTTGGT
GGCGAAAGCCCATGCGTTGTTGTTGACTGGGTCAGCAACGTGGTCGAAGAGGTTTTCGATGGGTCCCTTGCCGGTGACGATGGCCTGTACAAAGAAACCG
AACATGGAGAACATGGCGAGGATGCTTTGTGCGTGCACCAGATTAGGGTTGCCGAGGTAGTCGAGACCGCCCTCAGAGAAGATCTGAGCGCCGGCCTTGA
ACCACACGGCCTCACCGAACTTGATGCCGTTCTTGGACAGGATCTCTGGGAACACACACCCGAGTGCGCCAAGCATCGCCCACCTCGAGTGGATCACCTC
TAGCTCCCTATTCTTGGCGAACGTCTCTGGGTCAGCTGACAACCCTGCGGTGTCCCACCCGTAGTCACCGGGAAACTCGCCGGTCAAGTAAGATGGGGTC
TGCTCCGAGAATGGACCCAGGTACTTGGGACGGTCAGGACCGTACCTATATATTCATTCATCAC