Detailed information on CNT30685647


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522168Triticum urartuSetaria italica63.0753.7388.68468forward
CNT30187598Triticum urartuSecale cereale49.1939.8596.44365forward
CNT30298089Triticum urartuTriticum aestivum44.8848.0599.7333forward
CNT30589923Triticum urartuMusa acuminata56.7492.7387.89421forward
CNT30142779Triticum urartuLolium perenne66.3155.4788.41492forward
CNT30877Triticum urartuZea mays66.3157.8188.21492forward
CNT30579738Triticum urartuEchinochloa crusgalli66.7142.3189.49495forward

Expression of CNT30685647

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MDGRTDGRLNTFSFRGRSWFSTGPFPVTMACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKPMSTTCTAQMARMLCACTRLGLPR*

>peptide 2 (72 aa)
VMTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 3 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

Sequence

>CNT30685647
GTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGA
TCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACG
GACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACAT
GGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGTGGGTCGAAGCCCATGAGCACCACCTGC
ACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACC
ACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAG
CTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTGTCCCATCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGC
TCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTAC