Detailed information on CNT3027950


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701594Theobroma cacaoQuercus lobata97.4883.0482.98852forward
CNT30274489Theobroma cacaoChenopodium quinoa98.1770.182.63858forward
CNT30727227Theobroma cacaoCorchorus capsularis76.0957.8883.61665forward
CNT30171746Theobroma cacaoTrifolium pratense87.6499.4883.68766forward
CNT3079055Theobroma cacaoBrassica juncea98.8679.7882.29864forward
CNT30652253Theobroma cacaoRosa chinensis99.5467.0385.63870forward
CNT30622776Theobroma cacaoDaucus carota98.8660.2184.95864forward
CNT30153579Theobroma cacaoPrunus persica75.5141.6783.64660forward
CNT30642514Theobroma cacaoCannabis sativa10079.0282.95874forward
CNT30330420Theobroma cacaoDioscorea rotundata98.450.8382.91860forward
CNT30726149Theobroma cacaoLupinus angustifolius99.5445.6984.6870forward

Expression of CNT3027950

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGIPSLSWIFAFTLSMVSELSTSNVIVFPVRVFTKICIPPRRRRTK*

>peptide 2 (48 aa)
VKGRFLLDIIVSESSSIFKLLASKDEPLLVWWDTLLILDLCLHIINGV*

Sequence

>CNT3027950
GTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCGAGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATA
CCCTCCTTATCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAATGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAAATTT
GCATCCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAA
AATCAACCTCTGCTGATCTGGTGGGATACCCTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCTACCTCCAAAGTGATAGTC
TTTCCTGTGAGTGTCTTGACAAAGATTTGCATACCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTTC
GGCCGTCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTATCAATAGTGTC
AGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCCGTGAGAGTCTTGACAAAGATTTGCATACCACCACGGAGACGAAGCACCAAATGGAGGGTAGACTCC
TTCTGGATATTATAGTCAGCTAGGGTTCGACCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGGA
TCTTAGCCTTGACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTTTTC