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Detailed information on CNT30727227


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-151

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532887Corchorus capsularisEucalyptus grandis59.4425.3684.77683forward
CNT30316435Corchorus capsularisCorylus avellana48.8373.2485.56561forward
CNT30701196Corchorus capsularisQuercus lobata60.3178.8485.57693forward
CNT30279009Corchorus capsularisChenopodium quinoa58.4943.9884.67672forward
CNT3069547Corchorus capsularisQuercus suber59.6299.1384.67685forward
CNT30381184Corchorus capsularisManihot esculenta59.6276.2885.4685forward
CNT30156153Corchorus capsularisPistacia vera59.759.5586.15686forward
CNT30636126Corchorus capsularisCapsicum annuum60.2337.5185.4692forward
CNT3094992Corchorus capsularisSolanum tuberosum60.2359.4585.55692forward
CNT30588982Corchorus capsularisMusa acuminata54.2272.6184.43623forward
CNT3087979Corchorus capsularisVigna radiata60.473.7584.58694forward
CNT30311148Corchorus capsularisCamelina sativa59.754.184.99686forward
CNT30605389Corchorus capsularisGossypium raimondii54.2263.1884.11623forward
CNT30153909Corchorus capsularisPrunus persica53.774.9785.25617forward
CNT30423866Corchorus capsularisPapaver somniferum57.4451.684.85660forward
CNT30572855Corchorus capsularisVitis vinifera59.3672.6383.43682forward
CNT30706353Corchorus capsularisPrunus avium59.738.8786.3686forward
CNT30642981Corchorus capsularisCannabis sativa59.4460.8784.48683forward
CNT3027950Corchorus capsularisTheobroma cacao57.8876.0983.61665forward
CNT3026451Corchorus capsularisPopulus trichocarpa58.3172.8386.27670forward
CNT30327242Corchorus capsularisAsparagus officinalis59.5368.7485.09684forward
CNT30120072Corchorus capsularisCitrus clementina59.758.9985.86686forward
CNT30330418Corchorus capsularisDioscorea rotundata59.5368.2683.48684forward
CNT30726149Corchorus capsularisLupinus angustifolius58.435.2486.14671forward

Expression of CNT30727227

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MLLSARVLPSSSCFPAKISLCWSGGIPSLSWILALTLSIVSELSTSRVIVFPVSVFTKICIPPRRRRTKWRVDSF*

>peptide 2 (32 aa)
MVSELSTSRVMVLPVRVLTKICIYFEKKTRPE*

Sequence

>CNT30727227
GAAATGATCCCACTTAGTTCATCTTCCAATAGACTGGAGCAGAGTAGTTTTCTAATTGAATAACAATATGTAATGATAAACTTTCATCAATAGAGGGCTA
AGATCTTCAGAGTAACAACAGACTCATTGACAGCTGAAAAAGCAAAGATATCAATATATACCGTGCCACAATGGATTCAAACAAGCACAAGAATGTATGG
AAATTGAAATTTATTCAATGCCAGAGCATGGCAACATTAACCATAGCATAATACTAGATAAGTTTAAAGAAATTATTTAAAAGCCACTGCATAGCAGCAA
GCTCACACAACCAGAGATATCCATAACCATTCAATGCTCAACACACAATTGGGACTTCTAATGCAGGACCACATTGCAAATCATACTTGAAAGTTCATCA
CTTAAAAACCACCACGGAGACGGAGGACAAGGTGCAGAGTTGATTCCTTCTGAATGTTGTTGTCTGCCAGGGTCCTCCCATCTTCAAGTTGCTTCCCTGC
AAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGCTTTAACATTATCAATAGTGTCTGAACTCTCAACTTCCAGAGTGATA
GTCTTCCCGGTAAGTGTCTTCACAAAAATCTGCATACCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGG
TGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATTGT
GTCCGAGCTCTCAACTTCCAATGTGATAGTCTTCCCAGTAAGGGTCTTAACAAAGATTTGCATGCCACCTCGAAGACGGAGCACCAAGTGGAGGGTGGAT
TCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGTTGCTTACCGGCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTATCCT
GAATCTTGGCCTTTACATTGTCAATGGTGTCGGAACTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCATCTATTTTGA
AAAGAAAACAAGACCAGAATAAGGCTACTATGGATTGGAAAATAAATAC