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Detailed information on CNT30330420


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-152

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698491Dioscorea rotundataQuercus lobata38.2465.9583.46647forward
CNT30615929Dioscorea rotundataSesamum indicum53.0726.8581.63898forward
CNT30379426Dioscorea rotundataManihot esculenta53.6178.3282.47907forward
CNT30629220Dioscorea rotundataVigna unguiculata50.6579.3582.15857forward
CNT3097291Dioscorea rotundataSolanum tuberosum50.065582.17847forward
CNT30172216Dioscorea rotundataTrifolium pratense53.9653.5881.49913forward
CNT30145381Dioscorea rotundataMedicago truncatula51.9557.382.03879forward
CNT30310997Dioscorea rotundataCamelina sativa54.0879.2982.95915forward
CNT30612915Dioscorea rotundataArabis alpina38.5967.0483.77653forward
CNT30460578Dioscorea rotundataSaccharum spontaneum49.5941.9383.08839forward
CNT30608677Dioscorea rotundataGossypium raimondii53.9670.6781.49913forward
CNT30418079Dioscorea rotundataPapaver somniferum52.5468.781.66889forward
CNT30706353Dioscorea rotundataPrunus avium52.2550.0883.71884forward
CNT30642981Dioscorea rotundataCannabis sativa53.7881.1182.86910forward
CNT3027950Dioscorea rotundataTheobroma cacao50.8398.482.91860forward
CNT3056329Dioscorea rotundataAmborella trichopoda52.1976.4582.67883forward
CNT3026527Dioscorea rotundataPopulus trichocarpa53.0191.8183.05897forward
CNT30120580Dioscorea rotundataCitrus clementina52.7881.8582.19893forward
CNT30111771Dioscorea rotundataFicus carica52.0770.7184881forward
CNT30726149Dioscorea rotundataLupinus angustifolius53.9647.9581.6913forward

Expression of CNT30330420

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MKGGLLLDIIVSQCSSILQLLACKDEPLLVWRNAFLVLDLCLHIIYGVRALHFESDGFASKSLNKDLHASS*

>peptide 2 (68 aa)
NDTKSIVWNTNIKEPKLVATSHNIIHIKRDNTFSKHHHEDEEQDEGWTPSGYYSQPVFFHPPAACLQR*

>peptide 3 (29 aa)
RYQVYSLEHKHKRTKTSSNKPQHYSYKAR*

>peptide 4 (52 aa)
MSLCWSGGMPSLSWIFVFTLSMVSELSTSRVMVLPVRVLTKICMPPRRRRTR*

>peptide 5 (53 aa)
MPSLSWIFVLTLSIVSELSTSSVIVLPVRVFTNICIPPRRRRTKWRVDSFWML*

Sequence

>CNT30330420
AACGATACCAAGTCTATAGTTTGGAACACAAACATAAAAGAACCAAAACTAGTAGCAACAAGCCACAACATTATTCATATAAAGCGAGATAATACTTTCA
GCAAGCACCACCACGAAGACGAAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTATAGTCAGCCAGTGTTCTTCCATCCTCCAGCTGCTTGCCTGCA
AAGATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTGTCTTCACATTATCTATGGTGTCCGAGCTCTCCACTTCGAGAGTGATGG
TTTTGCCAGTAAGAGTCTTAACAAAGATCTGCATGCCTCCTCGTAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAAGGT
TCGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTCTGTTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCAATTGTG
TCCGAGCTTTCCACCTCGAGTGTAATCGTCTTACCAGTAAGGGTCTTCACAAATATCTGCATACCTCCACGAAGGCGGAGAACCAAGTGGAGGGTTGATT
CCTTTTGGATGTTGTAGTCGGCCAAAGTCCGGCCATCCTCTAGTTGTTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATCCCTTCTTTGTCTTG
GATCTTTGCCTTGACATTGTCAATCGTGTCTGAGCTTTCAACCTCCAGGGTAATAGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATACCTCCACGA
AGGCGGAGAACCAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCCAAAGTCCGGCCATCCTCGAGTTGTTTTCCAGCAAAGATCAGCCTCTGCT
GGTCAGGGGGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACATTATCAATTGTGTCAGAGCTCTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGTGT
TTTGACGAAGATCTGCATCTGAATTTCAGAGAAGAAATAATTTTAATTGCAAATTTCACATCTTAACGTTTGATTTCTCAAGAGAGGTTTCATACTGATC
ATCAAAACGTAAACTCTAATGAAAATCAATCAGAAATAAATAGCATCACAACACAAAATCGGAACACCAAGAACTCTAACTTCTCTGGAGATCCATAACC
TTAAAAGACATACTTTTACTCACACCTGATGGAAATATCATGCAATCAAACATAAAACAATGGAAAACCCCTATATAAAAGCACATACATCTCAAACGAT
TTGGAGAAAAAATCAATACCGATACTGATAAGTATGAGATAAAATTTCCATTAAAAGAGCTCATCTTGAATTTCTTTTTCAATCAAAGTTCATCTACTTA
ATTCAAATCATACAATTCACCAACCAGAATCAACAAGACCATCATTTTAAACAATCATCAAAAGCAAAGAGGCAAAAACAATAAAAAAAAACACAACATC
ACATAGCAAAAACCCTTCAAATTGAACCAATAAAAAGGAATCTAAAACAAAAAGAAAAGCAAGGATCACAAAATCAATCTTGAAATCGCAAAGGAAAGCA
AGAACTCCATACCTTAAGGACGATTTCTTAGAAAGAAACGAAGCCGAGATCAGAGAACTACCCAAACGCGAGCGAGAGAGAAAGGATTATCG