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Detailed information on CNT30171746


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-178

BLAST vs NONCODE:
NONMTRT002043, E-value = 6e-158

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406246Trifolium pratenseBeta vulgaris77.488.8283.72596forward
CNT30609009Trifolium pratenseGossypium raimondii98.5779.5682.08759forward
CNT3027950Trifolium pratenseTheobroma cacao99.4887.6483.68766forward

Expression of CNT30171746

Peptides detected in this lncRNA

>peptide 1 (59 aa)
SSCFPANINLCWSGGIPSLSCILVFTLSIVSELSTSKVIVFPVRVFTKICIPPRRRKTR*

>peptide 2 (52 aa)
MSLCWSGGIPSLSCILAFTLSIVSELSTSKVMVLPVNVFTKICMPPLKRRTR*

>peptide 3 (57 aa)
MSLQRFACLPSNEGQDEGWIPSGCCNRPRFGHLPAAFQQKSAFAGLGEYPPCLESWP*

>peptide 4 (48 aa)
MKGGFLLDVVIGQGSAIFQLLSSKNQPLLVWGNTLLVLNLGLNIVNSI*

>peptide 5 (31 aa)
FKLLSSKYQPLLVWGNTFFVLYLGLHIVNSV*

>peptide 6 (29 aa)
LQAAFQQISTFAGLGEYLLCPVSWSSHCQ*

Sequence

>CNT30171746
CTTCAAGCTGCTTTCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTGTATCTTGGTCTTCACATTGTCAATAGTGTCTGAGCT
CTCTACCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCATACCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGG
ATGTTATAGTCAGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGAGGGATACCCTCTTTGTCTTGTATCTTAG
CCTTCACATTGTCAATTGTGTCTGAGCTCTCTACCTCCAAAGTAATGGTCTTGCCTGTCAATGTCTTTACAAAGATTTGCATGCCTCCCCTCAAACGAAG
GACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGG
GGAATACCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAA
AAATCTGCATACCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCTAATGTCCTGCCATCCTCAAGCTGTTTTCC
AGCAAAAATCAGCCTTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTGACCTTGACATTTTCT