Detailed information on CNT30622776


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3027950Daucus carotaTheobroma cacao60.2198.8684.95864forward

Expression of CNT30622776

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVRVFTKICICTSTQSQQFRLHSNQTTNYV*

>peptide 2 (72 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSLRTNGELTPSGCCSRQGSCHPQAAYQQRSTSAGLGEYPPCPGSWP*

>peptide 3 (31 aa)
MVSELSTSRVIVFPVKVLTKICIPPRRRSTR*

>peptide 4 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRRRSTR*

>peptide 5 (30 aa)
MVFPVKVLTKICIPPRRRRTKWRVDSFWIL*

Sequence

>CNT30622776
TATCACACGACCACAGCAAAATACTTATTAAACTGATCTTTTATTAAGACTTAAAGCCACCACAACACATTGTTCTTTCCCCCACAGGGGAAAACACTAA
AACAAACTTTGATTTAAAACAAACAAGTTCAACAGAAACACAAACTTCTTTTCAGAAACCACAGCCACGGGCGCTTCCAACAGGCTTAGAGATCACCACC
ACGAAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTC
TGCTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATAGTCTTTCCAGTCA
GAGTCTTAACAAAGATCTGCATACCACCACGCAGACGAAGCACAAGGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCTGCCGTCTTC
CAATTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA
ACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGGAGACGGAGCACAAGATGAAGGGTTGATTCCTTCTGGATAT
TGTAATCAGCTAGGGTCCTGCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTT
GACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGGACC
AATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAAT
ACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATC
TGCATACCACCACGAAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGA
AGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGT
CTTTCCGGTGAGGGTTTTCACAAAGATTTGCATCTGTACATCAACACAATCACAACAATTTAGACTACATTCAAATCAAACAACTAATTATGTCTGACAA
CACATATCTACGTCTATTTAAACAATGAAACAATC