Detailed information on CNT3079055


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513419Brassica junceaJuglans regia60.5776.6485.52656forward
CNT30378432Brassica junceaArabidopsis thaliana51.1571.3987.18554forward
CNT30279021Brassica junceaChenopodium quinoa88.0973.1682.08954forward
CNT30525141Brassica junceaPhaseolus vulgaris89.6656.0981.67971forward
CNT30538027Brassica junceaBrassica napus98.5256.2890.631067forward
CNT30238962Brassica junceaBrassica oleracea90.6750.889.82982forward
CNT30511508Brassica junceaSolanum lycopersicum81.6367.5882.01884forward
CNT30145248Brassica junceaMedicago truncatula90.7750.0882.91983forward
CNT30311152Brassica junceaCamelina sativa89.9460.3888.71974forward
CNT3061706Brassica junceaArabidopsis lyrata61.1372.2789.12662forward
CNT30605652Brassica junceaGossypium raimondii81.6389.6683.26884forward
CNT30128346Brassica junceaCorymbia citriodora63.0773.5284.77683forward
CNT30480747Brassica junceaArabidopsis halleri69.0764.4886.1748forward
CNT30364985Brassica junceaSorghum bicolor79.4183.8282.79860forward
CNT30642514Brassica junceaCannabis sativa81.0779.3982.69878forward
CNT3027950Brassica junceaTheobroma cacao79.7898.8682.29864forward
CNT30326890Brassica junceaAsparagus officinalis81.9971.9684.46888forward
CNT30111644Brassica junceaFicus carica89.6668.1484.55971forward

Expression of CNT3079055

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVLPVRVLTKICIPPRRRRTRWSVDSFWML*

>peptide 2 (48 aa)
MERGLLLNVVIRKSASVFELLPSEDESLLVWWDPFLVLNLCLDIIDGV*

>peptide 3 (53 aa)
MPSLSWIFALTLSIVSELSTSRVMVLPVKVLTKICIPPLNLRTRWRVDSFWML*

>peptide 4 (40 aa)
FLQKQNRDHLPSALPKLKEHTFDHTDHVAQKLPPRRRRTK*

Sequence

>CNT3079055
ATTTTTGCAGAAGCAAAACAGAGACCACCTCCCAAGTGCATTACCGAAGCTCAAAGAACACACTTTTGACCACACAGATCACGTAGCTCAAAAGCTTCCA
CCACGAAGACGAAGAACTAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTC
TCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTTGCCTGT
CAAAGTCTTCACAAAGATTTGCATACCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATATTGTAATCCGCAAGCGTACGACCATCC
TCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATCGTGTCTGAGCTCT
CCACCTCAAGAGTGATGGTTTTGCCTGTGAGGGTCTTCACGAAAATCTGCATACCACCACGGAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGAAT
GTTGTAATCCGCAAGAGTGCGTCCGTCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCC
TTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATACCACCACGAAGACGAAGGA
CAAGGTGGAGTGTCGACTCTTTTTGGATGTTGTAGTCAGCGAGCGTCCTTCCATCCTCTAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGAGG
GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATCGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAG
ATCTGCATACCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTGCCGTC