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Detailed information on CNT30721855


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318276Triticum speltaCorylus avellana20.537.5793.5978forward
CNT30549981Triticum speltaIpomoea triloba20.5316.2291.0378forward
CNT30517219Triticum speltaJuglans regia20.534.293.5978forward
CNT30500546Triticum speltaCoffea canephora20.7917.0692.4179forward
CNT30494259Triticum speltaOlea europaea20.5315.4893.5978forward
CNT30503465Triticum speltaNicotiana attenuata20.5315.0393.5978forward
CNT30708369Triticum speltaGlycine max21.5813.693.982forward
CNT30394125Triticum speltaTriticum turgidum10076.6199.21380forward
CNT30544307Triticum speltaBrassica napus21.0516.191.2580forward
CNT3060340Triticum speltaArabidopsis lyrata20.5315.8592.3178forward
CNT3078393Triticum speltaBrassica juncea21.0518.3191.2580forward
CNT30261673Triticum speltaBrassica rapa20.537.1289.7478forward
CNT30601041Triticum speltaFraxinus excelsior20.5313.9892.3178forward
CNT30132841Triticum speltaLolium perenne2518.2797.8995forward
CNT30207458Triticum speltaHelianthus annuus20.2613.8593.5177forward
CNT30127630Triticum speltaCorymbia citriodora20.7917.6793.6779forward
CNT30626608Triticum speltaDaucus carota20.539.1892.3178forward
CNT30642554Triticum speltaCannabis sativa20.5313.5292.3178forward
CNT3032717Triticum speltaTheobroma cacao21.589.3892.6882forward
CNT3057178Triticum speltaAmborella trichopoda20.5313.5294.8778reverse complement
CNT30326905Triticum speltaAsparagus officinalis20.5317.7797.4478forward
CNT30604511Triticum speltaOryza punctata21.5815.7493.982forward
CNT30725701Triticum speltaLupinus angustifolius20.534.7393.5978forward
CNT3050740Triticum speltaCucumis sativus20.5311.8292.3178forward
CNT30115058Triticum speltaEutrema salsugineum22.3719.1989.4185forward

Expression of CNT30721855

SRR9114152: 150.5 RPKM

Peptides detected in this lncRNA

>peptide 1 (68 aa)
TSAAAAASRYRDPVRLLRRRRHLRDEGQVEEEEDEEAQEEAPKDEAAIQVGEQRGESLTLYHCTSLLG*

>peptide 2 (49 aa)
PPPPPQQADTETQSACCAAAATSAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30721855
ACCTCCGCCGCCGCCGCAGCAAGCAGATACCGAGACCCAGTCCGCCTGCTGCGCCGCCGCCGCCACCTCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGG
ATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGTGAACAACGAGGAGAAAGCTTAACCTTGTATCACTGCACCAGTCTGTT
GGGATGATAGGGTCTTTTGGTTCCTGATATGTCTGGGTTGTTGTGATATTTGGGGGATGCCAACCCTTGTAACATGAGGATAATTATATGCTTTCCTTCC
AAGGCTGGATATTTGGCTTAAGAAATATTATCGTCTATTTTTGATCTGTTGCCCTGCCTGTTCCTTCTTTTCTGGCATGC