Detailed information on CNT3075281


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372647Brassica junceaArabidopsis thaliana17.6226.5598.777forward
CNT30543929Brassica junceaBrassica napus90.6287.6195.96396forward
CNT30235682Brassica junceaBrassica oleracea83.5271.5795.34365forward
CNT30310640Brassica junceaCamelina sativa45.0847.3691.37197forward
CNT30261673Brassica junceaBrassica rapa10039.8795.88437forward
CNT30135839Brassica junceaLolium perenne17.8532.9192.3178forward

Expression of CNT3075281

Peptides detected in this lncRNA

>peptide 1 (40 aa)
YTSKLGFSRVYIHNYASFPLFVTVTVNSPTRVSRKRVSPT*

Sequence

>CNT3075281
TATACCTCTAAACTAGGGTTCTCAAGGGTATATATTCACAACTACGCTTCATTTCCTCTCTTTGTTACCGTCACCGTGAATTCGCCGACTAGGGTTTCAA
GAAAAAGAGTTTCTCCGACATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGACT
CAGAGAGAGACTGACTCCTCTTGAAAGACTTTGCTTTTCCATCTGCTTCCTTTGTTTTCCCTCATTTCTGTTTCGCTAGAGATCTTTAAAAGTACTTTTG
GTTTGGTCTCATTTCAGTTTTTTTAAGTGTTTGTAGCTTTGTGTTTGTCGGATTGTAGAGATCCTCAATTAATGGCAATGCTATATGTTTTTATCACCAC
TCTTATTTATATTCTTGCACACTGATTTAGGTTTAGA