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Detailed information on CNT3060687


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518318Arabidopsis lyrataJuglans regia2012.3693.5978forward
CNT30165236Arabidopsis lyrataPistacia vera205.4892.3178forward
CNT30543929Arabidopsis lyrataBrassica napus32.8228.3289.06128forward
CNT30235682Arabidopsis lyrataBrassica oleracea32.8225.190.62128forward
CNT30310640Arabidopsis lyrataCamelina sativa43.5940.8791.18170forward
CNT3081183Arabidopsis lyrataBrassica juncea32.8224.3392.97128forward
CNT30261673Arabidopsis lyrataBrassica rapa32.8211.6890.62128forward
CNT30137004Arabidopsis lyrataLolium perenne2033.3389.7478forward
CNT30115058Arabidopsis lyrataEutrema salsugineum32.8228.8994.53128forward

Expression of CNT3060687

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRAKWKKKRMRRLKRKRRKMRQRSNCYLLG*

Sequence

>CNT3060687
TTTTAACAGAGAGGAAAAAAAAACTAATATTTAACTTTTGAAATATCCTTCTCGTCCAAATATCTTAAGAGCTGATAAAACAAAAGGCCCAAATTGTTAT
ATGGGCTAAGAATAAAAAGGCCCATATATATACCTCTACCCTAGGGTCTTCAAGGTATATATTCAGTTACGCACCATTTTCACTTCCTGCTACCGTCGCC
GTGAAATCGCCGATTAGGGTTCTGAGACAAGAAGTTTCTCCGCCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGGAAGAGACGAAA
GATGAGACAGCGATCTAATTGCTATCTTTTAGGATGAAATTGATTCTCATTCTTTCTCCTACACACATGATTTCAGCTTGGATTGTTTCG