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Detailed information on CNT30563550


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548101Actinidia chinensisIpomoea triloba9.4928.986.5289forward
CNT3079853Actinidia chinensisBrassica juncea7.7825.2691.7873forward
CNT30718215Actinidia chinensisMalus domestica golden7.2530.0985.2968forward
CNT3025942Actinidia chinensisPopulus trichocarpa18.2351.6681.29171forward
CNT30585367Actinidia chinensisEchinochloa crusgalli7.8925.0885.1474forward

Expression of CNT30563550

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MKITVEFLPLSRCQHKRYKLDNRGGSNCNGHHSSWRLNWRWRRWAGVGGILTRLDRIRGLHCDSTFACGTRVTLHPDVTTLSPA*

>peptide 2 (49 aa)
MRFIAFTPNGLSLLCFIDKCKQEVINNSSFTSPTSLITTFKNNFAEHFT*

>peptide 3 (31 aa)
MPTEASPECASLPSLPTDCPCSVSSTNASKK*

Sequence

>CNT30563550
GAAACCGACAACAATGTGTTTTGTCTTTCAGGCTGAACAGAAATGTAAAGCAGCATATTATTATATACACAAATAAGTAGCTGAATAATCATCAATTGAC
CGTCCAACGATCCGGTGGAAATGAGGTATACTGAATTACAAGTCCAAGTAAAAAGCATGCTATAATCCTCTCACCCTCGAACTGCATTCCTCATCCACTG
TTCAAAAGCTCAAAAAGCTTTCCTACGCGCTGCTTCTCTTCCCGTCATTCGCAAATGCCCACTGAGGCTTCGCCTGAATGCGCTTCATTGCCTTCACTCC
CAACGGATTGTCCTTGCTCTGTTTCATCGACAAATGCAAGCAAGAAGTAATAAATAACTCATCTTTTACTTCACCCACCAGTTTGATTACTACTTTCAAA
AACAATTTTGCAGAACACTTCACATAAAACTCTTTCTGAAAACAAAATTTTCATATCGGGTTCATTTTGATTAAGAAACGTTTTGAGAATTCAAAAACAT
TTTTTTTGTGTGCGTGTTTTCTGAAAAACAATTCAACAAACTAATAAAAAGATAACAAAAACAATACAAAACAGGACATCAGCAGTAGCATAGTTCTATA
AATGAAGATAACAGTAGAATTCTTACCATTAAGCAGGTGCCAGCATAAACGTTACAAATTGGATAATCGTGGGGGCAGCAACTGTAATGGTCATCACAGC
AGTTGGAGGCTTAATTGGAGATGGAGGAGATGGGCCGGGGTTGGGGGGATTTTGACTCGTCTTGATAGGATAAGAGGGCTCCACTGCGATTCCACATTTG
CCTGTGGCACCCGTGTTACGCTCCATCCTGATGTAACCACTCTCTCCCCAGCTTGAACCCCATGAGTTCTTCACAATCCAGTAGTCCACGCTGTTTTCTG
TACCGTATCCAACAGCAGTGACACCGTGGTCTAGTGCA