Detailed information on CNT30372246


BLAST search results

BLAST vs Swiss-Prot:
sp|P43297|RD21A_ARATH, E-value = 1e-110

BLAST vs NONCODE:
NONATHT000573, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30412746Arabidopsis thalianaPapaver somniferum25.3142.9679.31290forward
CNT3025942Arabidopsis thalianaPopulus trichocarpa16.9358.6180.93194forward

Expression of CNT30372246

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSQSPLEEAMFRQCSFCLVTRMALRVYALRP*

>peptide 2 (29 aa)
MFFLPCDQNGVAGLRFKALTLNGLFLLCK*

>peptide 3 (92 aa)
MEVKVPGLAGFRHSLSGMKVQSRFHIFLMKTQCYAPSLGIHSLPSFYPMSFSQSSNLCRSQFRIQPPQLRGLVVFHNFHQIYPSDEKITSTH*

>peptide 4 (77 aa)
MDCSCSANDTFPNKVRFLDQGHKPGTREGSNYSCHHSKWLLLVGNIPKQSNTCHTQTDNNKCCSQDKCSNCHIGLEA*

>peptide 5 (57 aa)
MGDGGEGPGFGGFSPFFIGYEGSIAIPHFPDEDAMLRAILRYPLSPQLLPHEFLTIQ*

>peptide 6 (34 aa)
MIHSQTRSGSLIKVTNRVLVRAATIVVITASGCF*

Sequence

>CNT30372246
CATAGGACCATAACATAGCCATAAATATTCAATTTTCTTGAATTAACAATAAATGTACTGTATCAATGAAACCCAACTATGAAACTGAATGAAACATAGG
GTCCTTTTTTTATATACACGAAACCCAACAGCTGCATTTTTTATGTATCTAGTTATGGCATAAACAACAACATTAAAAAGCATCTGATAAATCCCTTCAG
AGAGATCTCTTCTCTCATGAGCCAGAGTCCTCTTGAAGAAGCAATGTTTAGGCAATGTTCTTTCTGCCTTGTGACCAGAATGGCGTTGCGGGTTTACGCT
TTAAGGCCTTAACACTAAATGGACTGTTCTTGCTCTGCAAATGATACATTCCCAAACAAGGTCAGGTTCCTTGATCAAGGTCACAAACCGGGTACTCGTG
AGGGCAGCAACTATAGTTGTCATCACAGCAAGTGGCTGCTTCTAGTGGGCAACATCCCCAAGCAAAGCAATACTTGCCATACTCAAACAGACAACAACAA
GTGTTGCTCTCAGGACAAGTGTAGTAACTGTCACATTGGGTTGGAGGCTTGATGGGAGATGGAGGTGAAGGTCCCGGGTTTGGCGGGTTTTCGCCATTCT
TTATCGGGTATGAAGGTTCAATCGCGATTCCACATTTTCCTGATGAAGACGCAATGTTACGCGCCATCCTTAGGTATCCACTCTCTCCCCAGCTTTTACC
CCATGAGTTTCTCACAATCCAGTAATCTTTGCCGTTCTCAGTTCCGTATCCAACCGCCACAACTCCGTGGTCTAGTTGTGTTCCACAACTTCCATCAAAT
ATACCCTTCAGATGAAAAGATCACATCAACACATTAGAGACAAAGGTGACTAACAACAATATGAACATTTTGAGACCAAAAATAGTGAAAAGCTACTTAA
TATTCAACCACCTATTAGATGCAATTGTTTCATGCGTTTATATATGAATAAAACTTTACATTTTCAAACACTAGCAACATTTTTTTCAATTTTTCATAGA
ATTCTTTTGTAAAGTGTAAACGCAAACACCAAACAGAGTTTCTCCTTTCGTTTGTAATTGGCGTATACAATTAACAACAGAAGTGAAATGGATTTATATG
CATAAAAACTAACAAACACCTAAGAACTATGAGAAGATGGTTAAAT