Detailed information on CNT30548101


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 3e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616633Ipomoea trilobaSesamum indicum36.0427.3481.98111forward
CNT3098506Ipomoea trilobaSolanum tuberosum28.574.2385.2388forward
CNT30563550Ipomoea trilobaActinidia chinensis28.99.4986.5289forward
CNT30511648Ipomoea trilobaSolanum lycopersicum25.3211.5684.6278forward
CNT30412746Ipomoea trilobaPapaver somniferum25.9711.858580forward
CNT3033044Ipomoea trilobaTheobroma cacao21.758.8289.5567forward
CNT3025942Ipomoea trilobaPopulus trichocarpa23.0521.4585.9271forward
CNT30119217Ipomoea trilobaCitrus clementina21.757.4488.0667forward

Expression of CNT30548101

Peptides detected in this lncRNA

>peptide 1 (69 aa)
AGGASRALVVIITHVGGTDWRWRRWTGVGWIFACLGWVRRLYRDTTQTIFVFHIALHPQIAFLSPGCSP*

>peptide 2 (51 aa)
MEEMDRGWVDFRLSWLGKKALSRYHTNHFCLSHCAASSNSLSLPRMQPMSS*

Sequence

>CNT30548101
GCAGGTGGTGCTAGTAGGGCACTCGTTGTAATTATCACACATGTTGGGGGGACTGACTGGAGATGGAGGAGATGGACCGGGGTTGGGTGGATTTTCGCCT
GTCTTGGTTGGGTAAGAAGGCTCTATCGCGATACCACACAAACCATTTTTGTCTTTCACATTGCGCTGCATCCTCAAATAGCCTTTCTCTCCCCAGGATG
CAGCCCATGAGTTCTTAACAATCCAATAATCTACGCCATTTTCTGTACCATATCCAACAGCAGTCACACCGTGGGTCCGGTCCATATGCAGTTTTCTGTA
ATGTTATG