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Detailed information on CNT3035651


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3025942Cucumis meloPopulus trichocarpa10.2434.1482.3113forward

Expression of CNT3035651

Peptides detected in this lncRNA

>peptide 1 (45 aa)
DINLFPLLNNFSILWTCVQMVDYFTDDTDHHCQTSQAPTNNFPSF*

>peptide 2 (41 aa)
MWAATVMVITAGTSFIAREVFVAFSWRVDRRWGRSRRFWRV*

>peptide 3 (31 aa)
MNSSQSNNLYRCRFHIQQQQHHDLDWFRNGQ*

>peptide 4 (59 aa)
TSTFFHFLITFLYYGPVFKWSIISLTTPTTIAKPLKHQRTTSQAFESALSDLQEGASAD*

Sequence

>CNT3035651
GACATCAACCTTTTTCCACTTCTTAATAACTTTTCTATACTATGGACCTGTGTTCAAATGGTCGATTATTTCACTGACGACACCGACCACCATTGCCAAA
CCTCTCAAGCACCAACGAACAACTTCCCAAGCTTTTGAATCCGCTTTGTCTGATTTGCAGGAAGGCGCTTCAGCAGATTGACGCCCATCAAGCTGTCTTT
GCTCTGTGTTTCATCCATTTACAATGATTAGATTATATCAAACATGAACTTGAATGACAAAGAACTCGTTGAAGAATGAGCATTGGTTAGAAAACTATGT
GATGTGACGTACCGCTCGGCAAGTTCCTGCCTCAAGGTCACAAACGGGATATTCATGTGGGCAGCAACTGTAATGGTCATCACAGCAGGTACTTCCTTCA
TCGCACGAGAAGTATTCGTCGCATTCAGTTGGAGGGTTGACAGGAGATGGGGGAGAAGCAGAAGGTTTTGGAGGGTTTGATCCGGATTTGATGGGGTATG
AAGGCTCTACTGCAATACCACACTTGCCTGTGGTACTGTTGGCCACATTTCTCTCCAACCTGATATAACCATTCTCTCCCCAGTCTTTACCCCATGAATT
CCTCACAATCCAATAATCTGTACCGTTGTCGGTTCCATATCCAACAGCAACAACACCATGATCTAGATTGGTTCCGCAACGGCCAGTGAAGACACCCTGA
ATTGATGCATAAGCACATATTTGTTTGAAATAGCTAACATTTCCCATGCCTAAATGGTGGATCAATACAGATTATCTTTGTCATTAAGACACGCAAACAC
AACAGATTAAACTCGAATATTGATTCCCAAACCAGAATGATGAATTAACACACAACAAAATATGTTCGAATAAGCTTCCAAAACAGATACCACCATTACA
AAGCCAGAGAAGTCAAAACCTTAGCTTTGTGAAACAACATTCAGGAAATTGCTCAAAGTTGAAGAGATTACCGATTGGTAAAGTTGGAAGGCTCTGCCAC
CAGCTTCAATTGCAACACTAACTGGTTGATTTGCTACAGCCTTTTTCAAGGAGCTCTCATCATTCTCAGGAACATCTTCATATCCATCTATGGTTACAAC
CTTG