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Detailed information on CNT3024289


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM6|PIP24_MAIZE, E-value = 1e-60

BLAST vs NONCODE:
NONPOPT000354, E-value = 4e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548370Populus trichocarpaIpomoea triloba9.5920.1791.4947forward
CNT30513856Populus trichocarpaJuglans regia16.9426.5284.3483forward
CNT30698271Populus trichocarpaQuercus lobata29.5946.0380.69145forward
CNT3070603Populus trichocarpaQuercus suber22.4528.9583.64110forward
CNT30525480Populus trichocarpaPhaseolus vulgaris44.910.2982.73220forward
CNT30629601Populus trichocarpaVigna unguiculata41.0244.5780.1201forward
CNT30712585Populus trichocarpaGlycine max16.1233.7684.8179forward
CNT3044723Populus trichocarpaPrunus dulcis30.216.2183.11148forward
CNT3096137Populus trichocarpaSolanum tuberosum31.2220.6883.66153forward
CNT30572629Populus trichocarpaVitis vinifera12.0422.1889.8359forward
CNT30704435Populus trichocarpaPrunus avium30.222.3981.08148forward
CNT30120547Populus trichocarpaCitrus clementina46.1288.9880.97226forward
CNT30176173Populus trichocarpaVigna angularis38.9862.6281.15191forward
CNT30724885Populus trichocarpaLupinus angustifolius29.3916.0481.25144forward

Expression of CNT3024289

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTTLLALRHQSMVLGVGLGNLLQRMILPLPLQYPLPCQNTRL

>peptide 2 (71 aa)
MAPAHWATMYITALIKDTFLAKNSPSNTKNTNPTTRISISINLAFVPNNSQNSDVKKEHSCYKLSNQGPVK*

>peptide 3 (98 aa)
REHSVDQDKSPNNLSAQSSACAVPISQNVGSAIIFCVVRLLEGLDQPNTTYGSRALGHHVHHSPDQRHLPGQEQPKQYQEYQPHHKDQHFHQSGFCTQ*

Sequence

>CNT3024289
CAGAGAACACAGTGTAGACCAGGACAAAAGTCCCAATAATCTCAGCGCCCAATCCAGTGCCTGTGCTGTACCCATCAGCCAAAACGTTGGCTCCGCCATT
ATATTTTGTGTAGTAAGACTTTTGGAAGGCCTTGACCAACCCAACACCACATATGGCTCCCGCGCATTGGGCCACCATGTACATCACAGCCCTGATCAAA
GACACCTTCCTGGCCAAGAACAGCCCAAGCAATACCAAGAATACCAACCCCACCACAAGGATCAGCATTTCCATCAATCTGGCTTTTGTACCCAATAACA
GTCAAAACAGTGATGTAAAGAAAGAGCATAGTTGCTATAAACTCAGCAATCAAGGCCCTGTAAAATGACCACTTTGTTAGCTCTTCGGCATCAATCAATG
GTGCTGGGGGTGGGTCTTGGTAATCTTTTGCAGAGAATGATCCTGCCTCTGCCACTTCAGTATCCTTTGCCATGCCAAAACACTAGACTT