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Detailed information on CNT3096137


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K215|PIP22_ORYSJ, E-value = 8e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070603Solanum tuberosumQuercus suber12.9725.2683.3396forward
CNT30632211Solanum tuberosumVigna unguiculata11.3527.6383.3384forward
CNT3024289Solanum tuberosumPopulus trichocarpa20.6831.2283.66153forward

Expression of CNT3096137

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYIMARTNDTFRAKKRPNVTAGLMCPPEIPAVQ*

>peptide 2 (43 aa)
MNIFLTLQDQLRVLGVDLGSLLVHIQYQLQCLYPFLALCFLAK*

Sequence

>CNT3096137
TTAATTTAACGGATCATCATTAAACTTTACATGACAAAATTATACTTACAGGAACGTGTGAGTCTCTGGCATTCCTCTTAGGATCAGTAGCAGCAAAAAC
AGTGTAAACAAGAACGAAAGTTCCAATAATCTCTGCCCCCAAACCGGTACCAGTACTATATCCATCATTCAACATATTAGCACCACCACCATATTTAACA
TAATAAGCTTTTTGAAAACATTTAACCAATCCACAACCACAAATGGCTCCTAAACACTGAGCTACAATGTACATTATGGCCCGAACCAACGATACTTTTC
GGGCCAAGAAAAGGCCGAATGTAACAGCAGGGTTAATGTGTCCACCAGAAATACCAGCAGTACAATAAACAAGTACAAAAATCATACCCCCAAATGCCCA
AGCAATTCCAAGAATACCAACACCACCACATTGGTCAGTAGAATTCTGGCTTTTGTACCCAATAACAGTCAGGACAGTTATGTAGAGAAATAAAAGAGTA
GCTATGAATTCAGCAATTATGGCTCTGTAAAATGAACATTTTCCTAACTCTTCAGGATCAATTAAGGGTGCTGGGGGTGGATCTTGGTAGTCTTTTGGTG
CATATTCAGTACCAACTTCAATGTCTTTACCCATTTTTGGCTCTCTGTTTTTTGGCTAAGTAAGAGTGATGTTGAAAAGTGTTTGATATTTGGTTGAAGA
TTGATAGGGGTATTTATGGAGTTAGGAATTTAATTAGAGG