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Detailed information on CNT30572629


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL7|PIP21_MAIZE, E-value = 6e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730253Vitis viniferaCorchorus capsularis28.9516.9288.3177forward
CNT3070602Vitis viniferaQuercus suber25.5621.5986.7668forward
CNT30404919Vitis viniferaBeta vulgaris21.439.1189.4757forward
CNT30629601Vitis viniferaVigna unguiculata26.6915.7492.9671forward
CNT30711842Vitis viniferaGlycine max18.821.289250forward
CNT30159576Vitis viniferaPistacia vera31.5810.6184.5284forward
CNT30636643Vitis viniferaCapsicum annuum35.7120.1383.1695forward
CNT3094036Vitis viniferaSolanum tuberosum27.827.7486.4974forward
CNT3084566Vitis viniferaVigna radiata22.1810.0289.8359forward
CNT30218729Vitis viniferaKalanchoe fedtschenkoi30.0827.5987.580forward
CNT30646760Vitis viniferaRosa chinensis27.8217.6685.1474forward
CNT30355349Vitis viniferaLactuca sativa24.0610.6785.9464forward
CNT30704435Vitis viniferaPrunus avium22.569.0886.6760forward
CNT3024289Vitis viniferaPopulus trichocarpa22.1812.0489.8359forward
CNT30120547Vitis viniferaCitrus clementina22.1823.2386.4459forward
CNT30331328Vitis viniferaDioscorea rotundata24.0612.4887.564forward
CNT30176173Vitis viniferaVigna angularis26.6923.2892.9671forward

Expression of CNT30572629

Peptides detected in this lncRNA

>peptide 1 (65 aa)
GVDKDKSSNDLSAQAGAFAVAGGELVGTAPVAIIVSRLEGFDETHTANGSKTLSHHKCRQCSKQG*

Sequence

>CNT30572629
CGGTGTAGACAAGGACAAAAGTTCCAATGATCTCAGCGCCCAAGCCGGTGCCTTTGCTGTAGCCGGTGGAGAGCTCGTTGGCACCGCCCCCGTAGCGATC
ATAGTAAGCAGATTGGAAGGCTTTGACGAGACCCACACCGCAAATGGCTCCAAGACACTGAGCCACCATAAATGCCGGCAGTGCAGTAAACAAGGATAAA
GATCATGCCACCAAAAGACCAAGCAATGCCCAGAATGCCAACACCACCGCATGGGTCACCCCCGGC